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    C13h1orf115 similar to human chromosome 1 open reading frame 115 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360894, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C13h1orf115provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 115provided by RGD
    Primary source
    RGD:1310587
    See related
    AllianceGenome:RGD:1310587
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310587
    Summary
    Predicted to be involved in regulation of response to drug. Predicted to be located in 9+0 non-motile cilium. Orthologous to human C1orf115 (chromosome 1 open reading frame 115). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Liver (RPKM 82.4), Kidney (RPKM 74.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C13h1orf115 in Genome Data Viewer
    Location:
    13q26
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (98953841..98963577, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (96422308..96432044, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (102780885..102790621, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481538 Neighboring gene mitochondrial amidoxime reducing component 1 Neighboring gene mitochondrial amidoxime reducing component 2 Neighboring gene microtubule affinity regulating kinase 1 Neighboring gene uncharacterized LOC134481539

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in regulation of response to drug ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in 9+0 non-motile cilium ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    required for drug-induced death protein 1
    Names
    uncharacterized protein C1orf115 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100857.1 → NP_001094327.1  required for drug-induced death protein 1

      See identical proteins and their annotated locations for NP_001094327.1

      Status: VALIDATED

      Source sequence(s)
      BC100157
      UniProtKB/Swiss-Prot
      Q3ZCQ0
      UniProtKB/TrEMBL
      A6JGP9
      Conserved Domains (1) summary
      pfam15828
      Location:61 → 131
      DUF4710; Domain of unknown function (DUF4710)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      98953841..98963577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZCQ0.2 GenPept UniProtKB/Swiss-Prot:Q3ZCQ0

    Gene LinkOut

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