tnfaip8l2b tumor necrosis factor, alpha-induced protein 8-like 2b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tnfaip8l2bprovided by ZNC
Official Full Name: tumor necrosis factor, alpha-induced protein 8-like 2bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1359
See related: Ensembl:ENSDARG00000046148 AllianceGenome:ZFIN:ZDB-GENE-040426-1359
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: TIPE2 B; tnfaip8l; tnfaip8l2; zgc:64074; tnfaip8l2a
Summary: Predicted to act upstream of or within innate immune response and regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in immature eye; midbrain; optic vesicle; retina; and yolk syncytial layer. Orthologous to human TNFAIP8L2 (TNF alpha induced protein 8 like 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 16

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (29698565..29713789, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (29763942..29779166, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune system process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within innate immune response	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of apoptotic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: tumor necrosis factor, alpha-induced protein 8-like protein 2 B

Names: TIPE2 A; TNF alpha-induced protein 8-like protein 2 B; TNFAIP8-like protein 2 A; TNFAIP8-like protein 2 B; tumor necrosis factor, alpha-induced protein 8, like 2; tumor necrosis factor, alpha-induced protein 8-like protein 2 A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200374.1 → NP_956668.1 tumor necrosis factor, alpha-induced protein 8-like protein 2 B

See identical proteins and their annotated locations for NP_956668.1

Status: PROVISIONAL

Source sequence(s)

BC053238

UniProtKB/Swiss-Prot

Q7T364

Related

ENSDARP00000067853.5, ENSDART00000067854.7

Conserved Domains (1) summary

pfam05527
Location:5 → 183

DUF758; Domain of unknown function (DUF758)