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    rnf38 ring finger protein 38 [ Danio rerio (zebrafish) ]

    Gene ID: 566820, updated on 17-Sep-2024

    Summary

    Official Symbol
    rnf38provided by ZNC
    Official Full Name
    ring finger protein 38provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8693
    See related
    Ensembl:ENSDARG00000062055 AllianceGenome:ZFIN:ZDB-GENE-030131-8693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa94e11; wu:fa94e11; si:dkey-20n3.1
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human RNF38 (ring finger protein 38). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See rnf38 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (18863095..18937045)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18170123..18244110)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535985 Neighboring gene zgc:195282 Neighboring gene uncharacterized LOC101886347 Neighboring gene uncharacterized LOC137495484

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    RING finger protein 38; E3 ubiquitin-protein ligase RNF38

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      18863095..18937045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690108.9XP_695200.4  E3 ubiquitin-protein ligase RNF38

      UniProtKB/TrEMBL
      A0A8N7TDP5, E7FDX7
      Related
      ENSDARP00000113766.1, ENSDART00000139241.2
      Conserved Domains (1) summary
      pfam13639
      Location:621662
      zf-RING_2; Ring finger domain