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    zbedx zinc finger BED-type containing X [ Danio rerio (zebrafish) ]

    Gene ID: 569044, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zbedxprovided by ZNC
    Official Full Name
    zinc finger BED-type containing Xprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2597
    See related
    Ensembl:ENSDARG00000041359 AllianceGenome:ZFIN:ZDB-GENE-030131-2597
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc12g06; wu:fb98h02; wu:fc12g06; zgc:161969
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Is expressed in telencephalon. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See zbedx in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (16468755..16475879)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (16341719..16348939)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 80 like 1 Neighboring gene solute carrier family 19 member 2 Neighboring gene proteasome 20S subunit beta 3 Neighboring gene si:ch73-193c12.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genomic Structure, Protein Character, Phylogenic Implication, and Embryonic Expression Pattern of a Zebrafish New Member of Zinc Finger BED-Type Gene Family. Zeng CW, et al. Genes (Basel), 2023 Jan 9. PMID 36672921, Free PMC Article
    2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC569044

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083849.1 → NP_001077318.1  uncharacterized protein LOC569044

      See identical proteins and their annotated locations for NP_001077318.1

      Status: PREDICTED

      Source sequence(s)
      BC134839
      UniProtKB/TrEMBL
      A4IFY5
      Related
      ENSDARP00000102374.2, ENSDART00000109151.5
      Conserved Domains (1) summary
      smart00614
      Location:9 → 59
      ZnF_BED; BED zinc finger

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      16468755..16475879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221765.1 → XP_068077866.1  uncharacterized protein LOC569044 isoform X1

      Related
      ENSDARP00000101134.2, ENSDART00000114667.4
    Nucleotide Protein Strain
    Heading Accession and Version

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