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    acbd3 acyl-Coenzyme A binding domain containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 406270, updated on 2-Nov-2024

    Summary

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    Official Symbol
    acbd3provided by ZNC
    Official Full Name
    acyl-Coenzyme A binding domain containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1930
    See related
    Ensembl:ENSDARG00000042623 AllianceGenome:ZFIN:ZDB-GENE-040426-1930
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa20g08; zgc:66303; wu:fa20g08; si:dkey-267p15.1
    Summary
    Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See acbd3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (30702528..30721862)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (30799649..30818983)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene centrosomal protein 43 Neighboring gene chemokine (C-C motif) receptor 6a Neighboring gene NHS-like 1b Neighboring gene heme binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Rgp1 contributes to craniofacial cartilage development and Rab8a-mediated collagen II secretion. Ritter DJ, et al. Front Endocrinol (Lausanne), 2023. PMID 36843607, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables fatty-acyl-CoA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Golgi resident protein GCP60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328207.1 → NP_001315136.1  Golgi resident protein GCP60

      Status: VALIDATED

      Source sequence(s)
      BX510322
      UniProtKB/TrEMBL
      A0A8M1P3M8, Q5RHP5
      Related
      ENSDARP00000062524.4, ENSDART00000062525.7

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      30702528..30721862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215407.1 → XP_068071508.1  Golgi resident protein GCP60 isoform X1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_212997.1: Suppressed sequence

      Description
      NM_212997.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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