U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Basic-leucine zipper (bZIP) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817695, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Basic-leucine zipper (bZIP) transcription factor family protein
    Primary source
    TAIR:AT2G31370
    Locus tag
    AT2G31370
    See related
    Araport:AT2G31370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PosF21; T28P16.14; T28P16_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (13378929..13381761)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glyoxalase 2-5 Neighboring gene 16:0delta9 desaturase 2 Neighboring gene salt tolerance homologue Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis thaliana mutant air1 implicates SOS3 in the regulation of anthocyanins under salt stress. Van Oosten MJ, et al. Plant Mol Biol, 2013 Nov. PMID 23925404
    2. Isolation and molecular characterization of PosF21, an Arabidopsis thaliana gene which shows characteristics of a b-Zip class transcription factor. Aeschbacher RA, et al. Plant J, 1991 Nov. PMID 1844885
    3. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Xu C, et al. Nat Plants, 2018 Feb. PMID 29358751
    4. Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. Tsugama D, et al. PLoS One, 2014. PMID 25093810, Free PMC Article
    5. bZIP transcription factors in Arabidopsis. Jakoby M, et al. Trends Plant Sci, 2002 Mar. PMID 11906833

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036379.3
    NM_001036380.2
    NM_001202721.1
    NM_001336329.1
    NM_128694.2
    NM_179836.2
    NM_179837.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Basic-leucine zipper (bZIP) transcription factor family protein
    NP_001031456.2
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 55870 Blast hits to 21504 proteins in 1137 species: Archae - 14; Bacteria - 3019; Metazoa - 20926; Fungi - 6116; Plants - 3494; Viruses - 436; Other Eukaryotes - 21865 (source: NCBI BLink).
    NP_001031457.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318327.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1).
    NP_180695.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 55870 Blast hits to 21504 proteins in 1137 species: Archae - 14; Bacteria - 3019; Metazoa - 20926; Fungi - 6116; Plants - 3494; Viruses - 436; Other Eukaryotes - 21865 (source: NCBI BLink).
    NP_850167.1
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 55870 Blast hits to 21504 proteins in 1137 species: Archae - 14; Bacteria - 3019; Metazoa - 20926; Fungi - 6116; Plants - 3494; Viruses - 436; Other Eukaryotes - 21865 (source: NCBI BLink).
    NP_850168.2
    • Basic-leucine zipper (bZIP) transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 55870 Blast hits to 21504 proteins in 1137 species: Archae - 14; Bacteria - 3019; Metazoa - 20926; Fungi - 6116; Plants - 3494; Viruses - 436; Other Eukaryotes - 21865 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13378929..13381761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336329.1 → NP_001318327.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    2. NM_128694.2 → NP_180695.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180695.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    3. NM_001036379.3 → NP_001031456.2  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031456.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    4. NM_001036380.2 → NP_001031457.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031457.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X351, F4IQT9
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    5. NM_001202721.1 → NP_001189650.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    6. NM_179836.2 → NP_850167.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850167.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

    7. NM_179837.2 → NP_850168.2  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850168.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q04088, Q27GL1, Q3EBQ8
      UniProtKB/TrEMBL
      A0A178W306, A0A384L503, A0A5S9X351, B9DGB1
      Conserved Domains (1) summary
      cd14703
      Location:204 → 253
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q04088.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools