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    DDX11L2 DEAD/H-box helicase 11 like 2 (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 84771, updated on 17-Jun-2024

    Summary

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    Official Symbol
    DDX11L2provided by HGNC
    Official Full Name
    DEAD/H-box helicase 11 like 2 (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:37103
    See related
    AllianceGenome:HGNC:37103
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 2.3), fat (RPKM 1.0) and 22 other tissues See more
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    Genomic context

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    See DDX11L2 in Genome Data Viewer
    Location:
    2q14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113599028..113603717, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114023714..114028447, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114356605..114361294, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114334474-114334974 Neighboring gene uncharacterized LOC124907875 Neighboring gene family with sequence similarity 138 member B Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114340974-114341805 Neighboring gene microRNA 1302-3 Neighboring gene WASP family homolog 2, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114349651-114350508 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114354507-114355491 Neighboring gene uncharacterized LOC124907874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11884 Neighboring gene ribosomal protein L23a pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11885 Neighboring gene RAB, member of RAS oncogene family like 2A Neighboring gene uncharacterized LOC112268423

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. DDX11L: a novel transcript family emerging from human subtelomeric regions. Costa V, et al. BMC Genomics, 2009 May 28. PMID 19476624, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2
    • DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2
    • DEAD/H box polypeptide 11 like 2

    Clone Names

    • FLJ41952, FLJ44010, MGC13005

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024004.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AK123946, AL078621, AW081020

    2. NR_024005.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has alternate splice sites, and represents a shorter transcript, compared to variant 1.
      Source sequence(s)
      AM992870, AW081020

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      113599028..113603717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      114023714..114028447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_032685.2: Suppressed sequence

      Description
      NM_032685.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

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