U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01352 long intergenic non-protein coding RNA 1352 [ Homo sapiens (human) ]

    Gene ID: 101929730, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01352provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1352provided by HGNC
    Primary source
    HGNC:HGNC:50578
    See related
    Ensembl:ENSG00000238078 AllianceGenome:HGNC:50578
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01352 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (220829255..220832429)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (220068972..220072146)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (221002597..221005771)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene mitochondrial amidoxime reducing component 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:220986059-220987258 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:220991871-220992562 Neighboring gene uncharacterized LOC124900455 Neighboring gene RNA, U6atac small nuclear 35, pseudogene Neighboring gene HLX antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1827 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:221053510-221054118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:221064967-221065512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:221065513-221066058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:221067145-221067784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:221069442-221070370 Neighboring gene H2.0 like homeobox Neighboring gene uncharacterized LOC105372930

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110797.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445423, BC034007
      Related
      ENST00000431347.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      220829255..220832429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      220068972..220072146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)