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    LOC4338208 xylanase inhibitor protein XIP-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338208, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338208
    Gene description
    xylanase inhibitor protein XIP-like
    Locus tag
    OSNPB_050247100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DIP3
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    Genomic context

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    See LOC4338208 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (8936720..8938009, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (8902500..8903802, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene expansin-B18-like Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g05700 Neighboring gene uncharacterized LOC136356432 Neighboring gene xylanase inhibitor protein XIP-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and expression of drought-induced protein 3 (DIP3) encoding a class III chitinase in upland rice. Guo XL, et al. Genet Mol Res, 2013 Dec 19. PMID 24391034
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xylanase inhibitor protein XIP-like
    Names
    Os05g0247100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      8936720..8938009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784423.3 → XP_015639909.1  xylanase inhibitor protein XIP-like

      UniProtKB/TrEMBL
      A0A5S6R7I1, A2Y2C4, A2Y2C8, Q0DJP2, Q5W6Z6, Q5WMX0
      Conserved Domains (2) summary
      cd02877
      Location:25 → 281
      GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
      pfam00704
      Location:27 → 188
      Glyco_hydro_18; Glycosyl hydrolases family 18
    Nucleotide Protein
    Heading Accession and Version

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