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    LINC01233 long intergenic non-protein coding RNA 1233 [ Homo sapiens (human) ]

    Gene ID: 100128139, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC01233provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1233provided by HGNC
    Primary source
    HGNC:HGNC:49756
    See related
    Ensembl:ENSG00000269364 AllianceGenome:HGNC:49756
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    XLOC_013014
    Expression
    Restricted expression toward testis (RPKM 2.8) See more
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    Genomic context

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    See LINC01233 in Genome Data Viewer
    Location:
    19p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (22532626..22533494)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (22671244..22672112)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (22715428..22716296)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376917 Neighboring gene vomeronasal 1 receptor 86 pseudogene Neighboring gene uncharacterized LOC101929124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:22723129-22723674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:22723675-22724220 Neighboring gene RNA, U6 small nuclear 1179, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:22762960-22763486 Neighboring gene uncharacterized LOC105372331

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma. Li J, et al. Gut, 2014 Nov. PMID 24522499, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110663.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC011467
      Related
      ENST00000594200.2

    2. NR_110664.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AI221170, BX092359, HY002653
      Related
      ENST00000598832.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      22532626..22533494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      22671244..22672112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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