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    rnf214 ring finger protein 214 [ Danio rerio (zebrafish) ]

    Gene ID: 323719, updated on 28-Oct-2024

    Summary

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    Official Symbol
    rnf214provided by ZNC
    Official Full Name
    ring finger protein 214provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2439
    See related
    Ensembl:ENSDARG00000094018 AllianceGenome:ZFIN:ZDB-GENE-030131-2439
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc07h01; wu:fc07h01; si:dkey-111e8.1
    Summary
    Predicted to enable ubiquitin-protein transferase activity. Orthologous to human RNF214 (ring finger protein 214). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See rnf214 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37981456..37997780, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (37381301..37397624, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene myelin protein zero-like 2b Neighboring gene platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 Neighboring gene apolipoprotein A-Ia Neighboring gene si:dkey-111e8.2 Neighboring gene uncharacterized LOC101882805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RING finger protein 214; ring finger protein 214

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      37981456..37997780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476555.2 → XP_021332230.1  RING finger protein 214

      UniProtKB/TrEMBL
      A0A0R4IQ14, A0A8M9QER6
      Related
      ENSDARP00000136622.1, ENSDART00000167694.2
      Conserved Domains (3) summary
      cl17238
      Location:615 → 659
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25732
      Location:78 → 308
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:311 → 502
      Atrophin-1; Atrophin-1 family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394596.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      144961..159890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001921490.8 → XP_001921525.4  RING finger protein 214

      UniProtKB/TrEMBL
      A0A8M1QKL4
      Conserved Domains (3) summary
      cl17238
      Location:615 → 659
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25732
      Location:78 → 261
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:326 → 613
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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