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    dpcd.S deleted in a mouse model of primary ciliary dyskinesia S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100049755, updated on 4-Nov-2024

    Summary

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    Official Symbol
    dpcd.S
    Official Full Name
    deleted in a mouse model of primary ciliary dyskinesia S homeolog
    Primary source
    Xenbase:XB-GENE-978029
    Locus tag
    XELAEV_18036953mg
    See related
    EnsemblRapid:ENSXLAG00005024781 AllianceGenome:Xenbase:XB-GENE-978029
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    dpcd
    Summary
    Orthologous to human DPCD (deleted in primary ciliary dyskinesia homolog (mouse)). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See dpcd.S in Genome Data Viewer
    Location:
    chromosome: 7S
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (20255488..20272177)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (20244500..20261622)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2, facilitated glucose transporter member 9 like S homeolog Neighboring gene uncharacterized LOC108697429 Neighboring gene F-box/WD repeat-containing protein 4-like Neighboring gene fibroblast growth factor 8 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
    2. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein DPCD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098695.1 → NP_001092165.1  protein DPCD

      See identical proteins and their annotated locations for NP_001092165.1

      Status: PROVISIONAL

      Source sequence(s)
      BC141744
      UniProtKB/Swiss-Prot
      A5D8N2
      UniProtKB/TrEMBL
      A0A974CB86
      Related
      ENSXLAP00005073397.1, ENSXLAT00005074962.1
      Conserved Domains (1) summary
      pfam14913
      Location:6 → 195
      DPCD; DPCD protein family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      20255488..20272177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D8N2.1 GenPept UniProtKB/Swiss-Prot:A5D8N2

    Gene LinkOut

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