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    taf15.L TATA-box binding protein associated factor 15 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447500, updated on 18-Sep-2024

    Summary

    Official Symbol
    taf15.L
    Official Full Name
    TATA-box binding protein associated factor 15 L homeolog
    Primary source
    Xenbase:XB-GENE-984016
    Locus tag
    XELAEV_18012683mg
    See related
    EnsemblRapid:ENSXLAG00005002321
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    taf15
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

    See taf15.L in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (97599532..97624432, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (91861677..91886634, complement)

    Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene growth arrest specific 2 like 2 L homeolog Neighboring gene matrix metallopeptidase 28 L homeolog Neighboring gene Z30 small nucleolar RNA Neighboring gene rhomboid domain containing 2 L homeolog Neighboring gene P450 (cytochrome) oxidoreductase L homeolog

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC82028

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    TATA-box binding protein associated factor 15 L homeolog
    Names
    TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094207.1NP_001087676.1  TATA-box binding protein associated factor 15 L homeolog

      See identical proteins and their annotated locations for NP_001087676.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081071
      UniProtKB/TrEMBL
      A0A974HYM3, Q66J39
      Related
      ENSXLAP00005006972.1, ENSXLAT00005007081.1
      Conserved Domains (4) summary
      smart00547
      Location:395421
      ZnF_RBZ; Zinc finger domain
      COG0724
      Location:266350
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      sd00025
      Location:397418
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cl17169
      Location:266348
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      97599532..97624432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)