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    ldhb.S lactate dehydrogenase B S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380546, updated on 3-Jul-2024

    Summary

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    Official Symbol
    ldhb.S
    Official Full Name
    lactate dehydrogenase B S homeolog
    Primary source
    Xenbase:XB-GENE-5908692
    Locus tag
    XELAEV_18019895mg
    See related
    EnsemblRapid:ENSXLAG00005000919
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ldh2; ldhb; ldhc; LDH-B; ldh-h; ldhba; trg-5; ldhb-a; ldhb-b; ldhb.L
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    Genomic context

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    See ldhb.S in Genome Data Viewer
    Location:
    chromosome: 3S
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (6880742..6893430, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (6906421..6919130, complement)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 9 S homeolog Neighboring gene PWP1 homolog, endonuclein S homeolog Neighboring gene ankyrin repeat and BTB domain containing 3 S homeolog Neighboring gene cryptochrome circadian regulator 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary relationships of lactate dehydrogenases (LDHs) from mammals, birds, an amphibian, fish, barley, and bacteria: LDH cDNA sequences from Xenopus, pig, and rat. Tsuji S, et al. Proc Natl Acad Sci U S A, 1994 Sep 27. PMID 7937776, Free PMC Article
    2. Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning. Gawantka V, et al. Mech Dev, 1998 Oct. PMID 9831640
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC64471

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables L-lactate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    L-lactate dehydrogenase B chain
    Names
    L-lactate dehydrogenase C chain
    LDH-C
    lactate dehydrogenase 2, B chain
    lactate dehydrogenase B L homeolog
    lactate dehydrogenase-B
    lactate dehydrogenase-C
    XP_018109579.1
    XP_018109580.1
    XP_018109581.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087383.3 → NP_001080852.2  L-lactate dehydrogenase B chain

      Status: VALIDATED

      Source sequence(s)
      JAGEVR010000040
      UniProtKB/Swiss-Prot
      P42119
      UniProtKB/TrEMBL
      A0A1L8GQX2, A0A974D8E2

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      6880742..6893430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018254091.2 → XP_018109580.1  L-lactate dehydrogenase B chain isoform X1

      UniProtKB/Swiss-Prot
      P42119
      UniProtKB/TrEMBL
      A0A1L8GQX2, A0A974D8E2
      Related
      ENSXLAP00005002765.1, ENSXLAT00005002817.1

    2. XM_018254092.2 → XP_018109581.1  L-lactate dehydrogenase B chain isoform X1

      UniProtKB/Swiss-Prot
      P42119
      UniProtKB/TrEMBL
      A0A1L8GQX2, A0A974D8E2
      Related
      ENSXLAP00005002760.1, ENSXLAT00005002812.1

    3. XM_018254090.2 → XP_018109579.1  L-lactate dehydrogenase B chain isoform X1

      UniProtKB/Swiss-Prot
      P42119
      UniProtKB/TrEMBL
      A0A1L8GQX2, A0A974D8E2
      Related
      ENSXLAP00005002759.1, ENSXLAT00005002811.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P42119.2 GenPept UniProtKB/Swiss-Prot:P42119
    P42121.2 GenPept UniProtKB/Swiss-Prot:P42121

    Gene LinkOut

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