U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    opn4xb.L melanopsin-B-like L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 373689, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Symbol
    opn4xb.L
    Full Name
    melanopsin-B-like L homeolog
    Primary source
    Xenbase:XB-GENE-5957217
    Locus tag
    XELAEV_18005764mg
    See related
    EnsemblRapid:ENSXLAG00005035909
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    mop; Xmop; opn4-A; opn4-B; opn4b.L; XB5957215; melanopsin; XB5957215.L; LOC100485437.L
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See opn4xb.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (81366471..81426010, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (70502146..70561233, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor type 1B L homeolog Neighboring gene PDZ and LIM domain 5 L homeolog Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 L homeolog Neighboring gene hematopoietic prostaglandin D synthase L homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Melanopsin photoreception in the eye regulates light-induced skin colour changes through the production of α-MSH in the pituitary gland. Bertolesi GE, et al. Pigment Cell Melanoma Res, 2015 Sep. PMID 26095528
    2. Wiring the retinal circuits activated by light during early development. Bertolesi GE, et al. Neural Dev, 2014 Feb 13. PMID 24521229, Free PMC Article
    3. Melanopsin: An opsin in melanophores, brain, and eye. Provencio I, et al. Proc Natl Acad Sci U S A, 1998 Jan 6. PMID 9419377, Free PMC Article
    4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables G protein-coupled photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    melanopsin-B
    Names
    opn4b
    opn4x or opn4b
    opsin 4 (melanopsin)
    opsin-4B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085674.1 → NP_001079143.1  melanopsin-B

      See identical proteins and their annotated locations for NP_001079143.1

      Status: PROVISIONAL

      Source sequence(s)
      AF014797
      UniProtKB/Swiss-Prot
      O57422
      UniProtKB/TrEMBL
      A0A974I3G3, B7ZQ22
      Related
      ENSXLAP00005107382.1, ENSXLAT00005109509.1
      Conserved Domains (1) summary
      cd15336
      Location:28 → 315
      7tmA_Melanopsin; vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G protein-coupled receptors

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      81366471..81426010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018254519.2 → XP_018110008.1  melanopsin-B isoform X1

      UniProtKB/TrEMBL
      A0A1L8HV37, A0A974I358

    2. XM_041586780.1 → XP_041442714.1  melanopsin-B isoform X2

      UniProtKB/TrEMBL
      A0A8J1MLR5
      Related
      ENSXLAP00005107370.1, ENSXLAT00005109496.1
      Conserved Domains (1) summary
      cd15336
      Location:28 → 315
      7tmA_Melanopsin; vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G protein-coupled receptors

    3. XM_018254470.2 → XP_018109959.1  melanopsin-B isoform X1

      UniProtKB/TrEMBL
      A0A1L8HV37, A0A974I358
      Related
      ENSXLAP00005107355.1, ENSXLAT00005109481.1

    4. XM_018254564.2 → XP_018110053.1  melanopsin-B isoform X3

      UniProtKB/Swiss-Prot
      O57422
      UniProtKB/TrEMBL
      A0A974I3G3, B7ZQ22
      Conserved Domains (1) summary
      cd15336
      Location:28 → 315
      7tmA_Melanopsin; vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O57422.1 GenPept UniProtKB/Swiss-Prot:O57422

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials