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    macir.L macrophage immunometabolism regulator L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446413, updated on 17-Aug-2024

    Summary

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    Official Symbol
    macir.L
    Official Full Name
    macrophage immunometabolism regulator L homeolog
    Primary source
    Xenbase:XB-GENE-942418
    Locus tag
    XELAEV_18008034mg
    See related
    EnsemblRapid:ENSXLAG00005032952
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    macir; c5orf30; c5orf30.L
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    Genomic context

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    See macir.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (190553783..190564090, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (177398644..177407613, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 12 L homeolog Neighboring gene uncharacterized LOC108695678 Neighboring gene diphosphoinositol pentakisphosphate kinase 2 L homeolog Neighboring gene peptidylglycine alpha-amidating monooxygenase L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC83849

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cilium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative regulation of inflammatory response ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in ciliary transition zone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    macrophage immunometabolism regulator
    Names
    UNC119-binding protein C5orf30 homolog
    UPF0684 protein C5orf30 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093109.1 → NP_001086578.1  macrophage immunometabolism regulator

      See identical proteins and their annotated locations for NP_001086578.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076830
      UniProtKB/Swiss-Prot
      Q6DFB0
      UniProtKB/TrEMBL
      A0A1L8I1M2, A0A974I504
      Related
      ENSXLAP00005098682.1, ENSXLAT00005100516.1
      Conserved Domains (1) summary
      pfam15435
      Location:3 → 199
      UNC119_bdg; UNC119-binding protein C5orf30 homolog

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      190553783..190564090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041580903.1 → XP_041436837.1  macrophage immunometabolism regulator isoform X2

      UniProtKB/Swiss-Prot
      Q6DFB0
      UniProtKB/TrEMBL
      A0A1L8I1M2, A0A974I504
      Related
      ENSXLAP00005098708.1, ENSXLAT00005100543.1
      Conserved Domains (1) summary
      pfam15435
      Location:3 → 199
      UNC119_bdg; UNC119-binding protein C5orf30 homolog

    2. XM_041580902.1 → XP_041436836.1  macrophage immunometabolism regulator isoform X1

      UniProtKB/TrEMBL
      A0A8J1M6A2
      Related
      ENSXLAP00005098640.1, ENSXLAT00005100471.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DFB0.1 GenPept UniProtKB/Swiss-Prot:Q6DFB0

    Gene LinkOut

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