rsl1d1.L ribosomal L1 domain containing 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rsl1d1.L
Official Full Name: ribosomal L1 domain containing 1 L homeolog
Primary source: Xenbase:XB-GENE-5886817
Locus tag: XELAEV_18045175mg
See related: EnsemblRapid:ENSXLAG00005014946 AllianceGenome:Xenbase:XB-GENE-5886817
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rsl1d1
Summary: Predicted to enable RNA binding activity. Predicted to act upstream of or within maturation of LSU-rRNA. Predicted to be part of 90S preribosome and cytosolic large ribosomal subunit. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9_10L

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (101683582..101693004)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (91105300..91114669)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within maturation of LSU-rRNA	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of 90S preribosome	IEA Inferred from Electronic Annotation more info
part_of cytosolic large ribosomal subunit	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: ribosomal L1 domain containing 1 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114795.1 → NP_001108267.1 ribosomal L1 domain containing 1 L homeolog

See identical proteins and their annotated locations for NP_001108267.1

Status: PROVISIONAL

Source sequence(s)

BC157448

UniProtKB/TrEMBL

A9ULY3

Conserved Domains (1) summary

pfam00687
Location:18 → 238

Ribosomal_L1; Ribosomal protein L1p/L10e family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

101683582..101693004

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041575432.1 → XP_041431366.1 ribosomal L1 domain containing 1 L homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8EXL6, A0A974C069

Related

ENSXLAP00005043768.1, ENSXLAT00005044839.1

Conserved Domains (1) summary

pfam00687
Location:21 → 237

Ribosomal_L1; Ribosomal protein L1p/L10e family
XM_041575434.1 → XP_041431368.1 ribosomal L1 domain containing 1 L homeolog isoform X3

UniProtKB/TrEMBL

A0A8J1LP69

Conserved Domains (1) summary

cd00403
Location:22 → 159

Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...
XM_041575433.1 → XP_041431367.1 ribosomal L1 domain containing 1 L homeolog isoform X2

UniProtKB/TrEMBL

A0A8J1LP96

Conserved Domains (1) summary

cd00403
Location:8 → 198

Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...