rps3.S ribosomal protein S3 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rps3.S
Official Full Name: ribosomal protein S3 S homeolog
Primary source: Xenbase:XB-GENE-6251888
Locus tag: XELAEV_18016414mg
See related: EnsemblRapid:ENSXLAG00005012704 AllianceGenome:Xenbase:XB-GENE-6251888
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rps3; rpls1b; rps3-a; rps3-b; XlrpS1c; rpls3-b
Summary: Predicted to enable DNA binding activity; RNA binding activity; and class I DNA-(apurinic or apyrimidinic site) endonuclease activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within several processes, including DNA repair; positive regulation of apoptotic signaling pathway; and translation. Predicted to be located in several cellular components, including cytosolic ribosome; mitochondrial inner membrane; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS3 (ribosomal protein S3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (165013239..165026365)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (155606198..155619478)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables class I DNA-(apurinic or apyrimidinic site) endonuclease activity	IEA Inferred from Electronic Annotation more info
enables lyase activity	IEA Inferred from Electronic Annotation more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA repair	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell division	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of apoptotic signaling pathway	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of translation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytosolic ribosome	IEA Inferred from Electronic Annotation more info
part_of cytosolic small ribosomal subunit	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info
part_of small ribosomal subunit	IEA Inferred from Electronic Annotation more info
located_in spindle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small ribosomal subunit protein uS3B

Names: 40S ribosomal protein S3; 40S ribosomal protein S3-B; S1B; ribosomal protein S1; ribosomal protein S3B

NP_001085315.1

EC 4.2.99.18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091846.2 → NP_001085315.1 small ribosomal subunit protein uS3B

See identical proteins and their annotated locations for NP_001085315.1

Status: PROVISIONAL

Source sequence(s)

Z34529

UniProtKB/Swiss-Prot

P47835

UniProtKB/TrEMBL

A0A974HWU0, Q7ZYT3

Related

ENSXLAP00005037360.1, ENSXLAT00005038269.1

Conserved Domains (3) summary

cd02413
Location:15 → 95

40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...

PTZ00084
Location:3 → 219

PTZ00084; 40S ribosomal protein S3; Provisional

pfam00189
Location:105 → 186

Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain