zgc:103508 zgc:103508 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:103508provided by ZNC
Official Full Name: zgc:103508provided by ZNC
Primary source: ZFIN:ZDB-GENE-041212-28
See related: Ensembl:ENSDARG00000099273 AllianceGenome:ZFIN:ZDB-GENE-041212-28
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be part of MLL1 complex and NURF complex. Orthologous to human C17orf49 (chromosome 17 open reading frame 49). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (22918384..22926042)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (22948932..22956590)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
part_of MLL1 complex	IBA Inferred from Biological aspect of Ancestor more info
part_of NURF complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: chromatin complexes subunit BAP18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008605.1 → NP_001008605.1 chromatin complexes subunit BAP18

See identical proteins and their annotated locations for NP_001008605.1

Status: PROVISIONAL

Source sequence(s)

BC086825

UniProtKB/TrEMBL

Q5PR52

Related

ENSDARP00000131223.1, ENSDART00000171298.2

Conserved Domains (2) summary

smart00717
Location:41 → 77

SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

cd00167
Location:41 → 77

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...