U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rbm45 RNA binding motif protein 45 [ Danio rerio (zebrafish) ]

    Gene ID: 568524, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rbm45provided by ZNC
    Official Full Name
    RNA binding motif protein 45provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070122-4
    See related
    Ensembl:ENSDARG00000063731 AllianceGenome:ZFIN:ZDB-GENE-070122-4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    drb1; si:ch211-222f23.2
    Summary
    Predicted to enable RNA binding activity. Orthologous to human RBM45 (RNA binding motif protein 45). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rbm45 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (1462002..1483902, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (1460843..1481728, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene protein kinase, interferon-inducible double stranded RNA dependent activator Neighboring gene oxysterol binding protein-like 6 Neighboring gene si:ch211-222f23.6 Neighboring gene phosphodiesterase 11a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. Sundström G, et al. BMC Evol Biol, 2008 Sep 19. PMID 18803835, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RNA-binding protein 45
    Names
    developmentally regulated RNA-binding protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127402.1 → NP_001120874.1  RNA-binding protein 45

      See identical proteins and their annotated locations for NP_001120874.1

      Status: PROVISIONAL

      Source sequence(s)
      BX004991
      UniProtKB/TrEMBL
      A0A8N7UZ02, B0S522
      Related
      ENSDARP00000145527.1, ENSDART00000181215.1
      Conserved Domains (4) summary
      cd12366
      Location:14 → 94
      RRM1_RBM45; RNA recognition motif 1 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12367
      Location:110 → 183
      RRM2_RBM45; RNA recognition motif 2 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12368
      Location:234 → 307
      RRM3_RBM45; RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12369
      Location:384 → 451
      RRM4_RBM45; RNA recognition motif 4 in RNA-binding protein 45 (RBM45) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      1462002..1483902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172509.5 → XP_005172566.1  RNA-binding protein 45 isoform X1

      See identical proteins and their annotated locations for XP_005172566.1

      UniProtKB/TrEMBL
      A0A8N7UZ02, B0S522
      Related
      ENSDARP00000087847.5, ENSDART00000093415.7
      Conserved Domains (4) summary
      cd12366
      Location:14 → 94
      RRM1_RBM45; RNA recognition motif 1 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12367
      Location:110 → 183
      RRM2_RBM45; RNA recognition motif 2 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12368
      Location:234 → 307
      RRM3_RBM45; RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12369
      Location:384 → 451
      RRM4_RBM45; RNA recognition motif 4 in RNA-binding protein 45 (RBM45) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools