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    jac4 jacalin 4 [ Danio rerio (zebrafish) ]

    Gene ID: 795300, updated on 17-Sep-2024

    Summary

    Official Symbol
    jac4provided by ZNC
    Official Full Name
    jacalin 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8643
    See related
    Ensembl:ENSDARG00000092352 AllianceGenome:ZFIN:ZDB-GENE-030131-8643
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa92h10; wu:fa92h10; si:dkeyp-32g11.9
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    Genomic context

    See jac4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8457072..8458462)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8211120..8212555)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene aerolysin-like protein Neighboring gene natterin-like protein 2 Neighboring gene natterin-like protein 4 Neighboring gene jacalin 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386396.1NP_001373325.1  jacalin 4

      Status: VALIDATED

      Source sequence(s)
      CR382283
      UniProtKB/TrEMBL
      A0A8M1Q1F9, E9QIV8
      Related
      ENSDARP00000142255.1, ENSDART00000172880.2
      Conserved Domains (3) summary
      cd09302
      Location:15144
      Jacalin_like; Jacalin-like lectin domain
      cd10140
      Location:194245
      PFM_aerolysin_family; putative membrane-spanning region [structural motif]
      cl40431
      Location:146313
      PFM_aerolysin_family; pore-forming module of aerolysin-type beta-barrel pore-forming proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      8457072..8458462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)