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    si:dkey-73n10.1 si:dkey-73n10.1 [ Danio rerio (zebrafish) ]

    Gene ID: 558609, updated on 17-Aug-2024

    Summary

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    Official Symbol
    si:dkey-73n10.1provided by ZNC
    Official Full Name
    si:dkey-73n10.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9311
    See related
    Ensembl:ENSDARG00000069168 AllianceGenome:ZFIN:ZDB-GENE-030131-9311
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj65a11; wu:fj65a11
    Summary
    Orthologous to human C15orf39 (chromosome 15 open reading frame 39). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (18931484..18942151, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (18942294..18953073, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438119 Neighboring gene ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Neighboring gene phosphopantothenoylcysteine decarboxylase Neighboring gene 3-hydroxyacyl-CoA dehydratase 3 Neighboring gene integrator complex subunit 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    si:dkey-73n10.1; uncharacterized protein C15orf39 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      18931484..18942151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467794.1 → XP_021323469.1  uncharacterized protein C15orf39 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9PFS7

    2. XM_021467796.1 → XP_021323471.1  uncharacterized protein C15orf39 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8M9PMH8, F1QGJ6

    3. XM_021467795.1 → XP_021323470.1  uncharacterized protein C15orf39 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M9PQR5

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395020.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      213453..223809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009293600.3 → XP_009291875.2  uncharacterized protein C15orf39 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M3ARY4
      Conserved Domains (1) summary
      pfam02513
      Location:1220 → 1265
      Spin-Ssty; Spin/Ssty Family

    2. XM_005159151.4 → XP_005159208.2  uncharacterized protein C15orf39 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8M2B623

    3. XM_021473272.1 → XP_021328947.1  uncharacterized protein C15orf39 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8M9PD12

    4. XM_003200448.5 → XP_003200496.3  uncharacterized protein C15orf39 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8M1RMQ0
    Nucleotide Protein
    Heading Accession and Version

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