rbm26 RNA binding motif protein 26 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm26provided by ZNC
Official Full Name: RNA binding motif protein 26provided by ZNC
Primary source: ZFIN:ZDB-GENE-050706-50
See related: Ensembl:ENSDARG00000104130 AllianceGenome:ZFIN:ZDB-GENE-050706-50
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc66d05; wu:fc66d05; zgc:109736
Summary: Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (4371100..4401247)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (4210983..4241150)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc66d05.x1 (e-PCR)
- UniSTS:203993

Homology

NCBI Orthologs

Orthologs from OrthoDB

Clone Names

MGC109736

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RNA-binding protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

4371100..4401247

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002662263.7 → XP_002662309.4 RNA-binding protein 26

UniProtKB/TrEMBL

A0A0R4IYE4, A0A8M1RQZ3

Related

ENSDARP00000141476.1, ENSDART00000168973.2

Conserved Domains (6) summary

smart00356
Location:302 → 322

ZnF_C3H1; zinc finger

COG0724
Location:453 → 740

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12258
Location:886 → 957

RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins

pfam12018
Location:731 → 853

DUF3508; Domain of unknown function (DUF3508)

cl02562
Location:7 → 72

PWI; PWI domain

cl17169
Location:537 → 612

RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001033588.1: Suppressed sequence

Description

NM_001033588.1: This RefSeq was temporarily suppressed because there is insufficient transcript data. The draft reference genome sequence cannot be used because it appears to contain errors such that the correct protein cannot be represented.