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    CLUHP3 clustered mitochondria homolog pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 100132341, updated on 22-Oct-2024

    Summary

    Official Symbol
    CLUHP3provided by HGNC
    Official Full Name
    clustered mitochondria homolog pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:28447
    See related
    Ensembl:ENSG00000290927 AllianceGenome:HGNC:28447
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    URLC3; C16orf67; KIAA0664L3; KIAA0664P3
    Expression
    Ubiquitous expression in lymph node (RPKM 5.2), thyroid (RPKM 4.9) and 25 other tissues See more
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    Genomic context

    See CLUHP3 in Genome Data Viewer
    Location:
    16p11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (31700594..31707714)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (32087987..32095104)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (31711915..31719035)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 66 pseudogene Neighboring gene RNA binding motif protein 22 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7425 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:31719202-31719702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10767 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10768 Neighboring gene KRAB box domain containing 5 Neighboring gene uncharacterized LOC107983990

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • KIAA0664-like 3
    • clustered mitochondria (cluA/CLU1) homolog pseudogene 3
    • up-regulated in lung cancer 3

    Clone Names

    • MGC3020, FLJ30136, KIAA0664, MGC31812

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024034.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC074050
      Related
      ENST00000254109.11

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      31700594..31707714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      32087987..32095104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_026408.1: Suppressed sequence

      Description
      NG_026408.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
    2. NM_024048.2: Suppressed sequence

      Description
      NM_024048.2: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.