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    2900079G21Rik RIKEN cDNA 2900079G21 gene [ Mus musculus (house mouse) ]

    Gene ID: 620760, updated on 22-Oct-2024

    Summary

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    Official Symbol
    2900079G21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2900079G21 geneprovided by MGI
    Primary source
    MGI:MGI:1920268
    See related
    Ensembl:ENSMUSG00000087038 AllianceGenome:MGI:1920268
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6179; C130083B14
    Expression
    Biased expression in thymus adult (RPKM 3.4), frontal lobe adult (RPKM 2.7) and 6 other tissues See more
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    Genomic context

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    See 2900079G21Rik in Genome Data Viewer
    Location:
    9 F3; 9 62.55 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (112063345..112177993)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (112234277..112348925)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cyclic AMP-regulated phosphoprotein, 21 Neighboring gene microRNA 128-2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112110378-112110659 Neighboring gene RIKEN cDNA 2310075C17 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112121946-112122147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112127556-112127739 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112129224-112129377 Neighboring gene STARR-seq mESC enhancer starr_25304 Neighboring gene STARR-seq mESC enhancer starr_25305 Neighboring gene predicted gene, 24957 Neighboring gene STARR-seq mESC enhancer starr_25306 Neighboring gene STARR-seq mESC enhancer starr_25307 Neighboring gene selection and upkeep of intraepithelial T cells 4 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015468.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This transcript is variant (1).
      Source sequence(s)
      BC056188
      Related
      ENSMUST00000139552.5

    2. NR_033431.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AK013806, BE946996
      Related
      ENSMUST00000149308.6

    3. NR_033432.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks the 3' exon and contains three alternate 3' exons, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AC100550, AK013806, AK048592
      Related
      ENSMUST00000144424.9

    4. NR_033433.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) represents use of an internal promoter and lacks both the 5' and 3' exon and contains four additional exons, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AK047318
      Related
      ENSMUST00000163302.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      112063345..112177993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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