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    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838026, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    Primary source
    TAIR:AT1G14640
    Locus tag
    AT1G14640
    See related
    Araport:AT1G14640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E21.18; T5E21_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5023426..5025955)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene decoy Neighboring gene XRI1-like protein Neighboring gene uncharacterized protein Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332130.1
    NM_101331.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    NP_001319004.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: male gametophyte, flower, seed, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 30145 Blast hits to 19260 proteins in 1053 species: Archae - 38; Bacteria - 3368; Metazoa - 12891; Fungi - 4189; Plants - 5021; Viruses - 726; Other Eukaryotes - 3912 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5023426..5025955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332130.1 → NP_001319004.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB6, A0A384LD26, A0A5S9UF98, F4HW92
      Conserved Domains (4) summary
      smart00648
      Location:182 → 235
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam03154
      Location:523 → 634
      Atrophin-1; Atrophin-1 family
      pfam12230
      Location:250 → 460
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
      cl28922
      Location:689 → 735
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. NM_101331.2 → NP_172916.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172916.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB6, A0A384LD26, A0A5S9UF98, F4HW92
      Conserved Domains (4) summary
      smart00648
      Location:182 → 235
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam03154
      Location:523 → 634
      Atrophin-1; Atrophin-1 family
      pfam12230
      Location:250 → 460
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
      cl28922
      Location:689 → 735
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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