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    lysine ketoglutarate reductase trans-splicing protein (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822368, updated on 18-Sep-2024

    Summary

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    Official Full Name
    lysine ketoglutarate reductase trans-splicing protein (DUF707)
    Primary source
    TAIR:AT3G27470
    Locus tag
    AT3G27470
    See related
    Araport:AT3G27470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (10162960..10167546)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene SGF29 tudor-like domain-containing protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084748.2
    NM_001338880.1
    NM_113662.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    lysine ketoglutarate reductase trans-splicing protein (DUF707)
    NP_001078217.1
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_189383.2
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10162960..10167546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338878.1 → NP_001327536.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XGB4, A0A654FB87, Q8RXE2
      Conserved Domains (1) summary
      pfam05212
      Location:94 → 381
      DUF707; Protein of unknown function (DUF707)

    2. NM_001338879.1 → NP_001327534.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XGB4, A0A654FB87, Q8RXE2
      Conserved Domains (1) summary
      pfam05212
      Location:94 → 381
      DUF707; Protein of unknown function (DUF707)

    3. NM_001084748.2 → NP_001078217.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078217.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XGB4, A0A654FB87, Q8RXE2
      Conserved Domains (1) summary
      pfam05212
      Location:94 → 381
      DUF707; Protein of unknown function (DUF707)

    4. NM_113662.5 → NP_189383.2  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189383.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XGB4, A0A654FB87, Q8RXE2
      Conserved Domains (1) summary
      pfam05212
      Location:94 → 381
      DUF707; Protein of unknown function (DUF707)

    5. NM_001338880.1 → NP_001327535.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSL9, A0A5S9XGB4, A0A654FB87
    Nucleotide Protein
    Heading Accession and Version

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