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    Gm12888 predicted gene 12888 [ Mus musculus (house mouse) ]

    Gene ID: 545677, updated on 17-Aug-2024

    Summary

    Official Symbol
    Gm12888provided by MGI
    Official Full Name
    predicted gene 12888provided by MGI
    Primary source
    MGI:MGI:3652130
    See related
    Ensembl:ENSMUSG00000073764 AllianceGenome:MGI:3652130
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward stomach adult (RPKM 1.3) See more
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    Genomic context

    See Gm12888 in Genome Data Viewer
    Location:
    4 D2.2; 4 56.8 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (121173513..121182114, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (121316316..121324917, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene rearranged L-myc fusion sequence Neighboring gene STARR-positive B cell enhancer ABC_E8954 Neighboring gene STARR-seq mESC enhancer starr_11261 Neighboring gene predicted gene, 30102 Neighboring gene predicted gene, 40239 Neighboring gene STARR-seq mESC enhancer starr_11263 Neighboring gene STARR-seq mESC enhancer starr_11264 Neighboring gene palmitoyl-protein thioesterase 1 pseudogene Neighboring gene predicted gene 12886

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC545677

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033791.3NP_001028963.1  uncharacterized protein LOC545677 precursor

      See identical proteins and their annotated locations for NP_001028963.1

      Status: VALIDATED

      Source sequence(s)
      AK136549
      Consensus CDS
      CCDS38867.1
      UniProtKB/TrEMBL
      B9EKG4, Q3UW77
      Related
      ENSMUSP00000095515.3, ENSMUST00000097905.3
      Conserved Domains (1) summary
      cl21494
      Location:52116
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      121173513..121182114 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)