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    si:ch211-215a10.4 si:ch211-215a10.4 [ Danio rerio (zebrafish) ]

    Gene ID: 565228, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch211-215a10.4provided by ZNC
    Official Full Name
    si:ch211-215a10.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5518
    See related
    Ensembl:ENSDARG00000056165 AllianceGenome:ZFIN:ZDB-GENE-030131-5518
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd21a03; wu:fd21a03
    Summary
    Is expressed in female organism. Orthologous to human C6orf136 (chromosome 6 open reading frame 136). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch211-215a10.4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (30450125..30468234)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30862812..30880921)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 1 Neighboring gene BCL2 associated athanogene 6, like Neighboring gene hippocalcin like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC162261

    General protein information

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    Preferred Names
    uncharacterized protein C6orf136 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082846.1 → NP_001076315.1  uncharacterized protein C6orf136 homolog

      Status: PROVISIONAL

      Source sequence(s)
      BX510301
      UniProtKB/TrEMBL
      A0A8M1NDD3, A3KPX0
      Related
      ENSDARP00000068194.5, ENSDART00000073704.7
      Conserved Domains (1) summary
      pfam10184
      Location:247 → 372
      DUF2358; Uncharacterized conserved protein (DUF2358)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      30450125..30468234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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