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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001168321.1 → NP_001161793.1 BCL-6 corepressor isoform d
See identical proteins and their annotated locations for NP_001161793.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (e) has an alternate 5' UTR exon and lacks an exon and a segment in the CDS, as compared to variant a. The resulting isoform (d) lacks two internal segments, as compared to isoform a.
- Source sequence(s)
-
AK129398, BC058656
- Consensus CDS
-
CCDS30022.1
- UniProtKB/Swiss-Prot
-
Q8CGN4
- Related
- ENSMUSP00000048024.7, ENSMUST00000043441.13
- Conserved Domains (5) summary
-
- cd00204
Location:1409 → 1517
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- cd14261
Location:1582 → 1698
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam12796
Location:1419 → 1510
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1153 → 1365
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
- sd00045
Location:1415 → 1446
- ANK; ANK repeat [structural motif]
-
NM_029510.3 → NP_083786.2 BCL-6 corepressor isoform a
See identical proteins and their annotated locations for NP_083786.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (a) encodes the longest isoform (a).
- Source sequence(s)
-
AK053309, BC058656, CD563463
- Consensus CDS
-
CCDS40873.1
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Related
- ENSMUSP00000111175.3, ENSMUST00000115513.9
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
NM_175044.3 → NP_778209.2 BCL-6 corepressor isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (b) lacks an exon in the CDS, as compared to variant a. The resulting isoform (b) lacks an internal segment, as compared to isoform a.
- Source sequence(s)
-
AK053309, BC058656, CD563463
- Consensus CDS
-
CCDS40872.1
- UniProtKB/Swiss-Prot
-
Q8CGN4
- Related
- ENSMUSP00000111174.3, ENSMUST00000115512.9
- Conserved Domains (5) summary
-
- cd14261
Location:1616 → 1732
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1449 → 1480
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1453 → 1544
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1187 → 1399
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
NM_175045.3 → NP_778210.2 BCL-6 corepressor isoform c
See identical proteins and their annotated locations for NP_778210.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (c) lacks a segment in the CDS, as compared to variant a. The resulting isoform (c) lacks an internal segment, as compared to isoform a.
- Source sequence(s)
-
AK053309, BC058656
- Consensus CDS
-
CCDS30021.1
- UniProtKB/Swiss-Prot
-
Q8CGN4
- Related
- ENSMUSP00000068618.8, ENSMUST00000065143.14
- Conserved Domains (5) summary
-
- cd14261
Location:1600 → 1716
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1433 → 1464
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1437 → 1528
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1171 → 1383
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
NM_175046.3 → NP_778211.2 BCL-6 corepressor isoform d
See identical proteins and their annotated locations for NP_778211.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (d) lacks an exon and a segment in the CDS, as compared to variant a. The resulting isoform (d) lacks two internal segments, as compared to isoform a.
- Source sequence(s)
-
AK053309, BC058656, CD563463
- Consensus CDS
-
CCDS30022.1
- UniProtKB/Swiss-Prot
-
Q8CGN4
- Related
- ENSMUSP00000116258.2, ENSMUST00000124033.8
- Conserved Domains (5) summary
-
- cd00204
Location:1409 → 1517
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- cd14261
Location:1582 → 1698
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam12796
Location:1419 → 1510
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1153 → 1365
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
- sd00045
Location:1415 → 1446
- ANK; ANK repeat [structural motif]
RNA
-
NR_045434.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (f) lacks several 3' exons and includes three alternate 3' exons. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
BC027704, BP776822
- Related
-
ENSMUST00000209776.2
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
11902976..12026769 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017318623.3 → XP_017174112.1 BCL-6 corepressor isoform X2
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_036162096.1 → XP_036017989.1 BCL-6 corepressor isoform X4
- Conserved Domains (5) summary
-
- cd14261
Location:1616 → 1732
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1449 → 1480
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1453 → 1544
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1187 → 1399
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_017318621.3 → XP_017174110.1 BCL-6 corepressor isoform X2
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_036162097.1 → XP_036017990.1 BCL-6 corepressor isoform X4
- Conserved Domains (5) summary
-
- cd14261
Location:1616 → 1732
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1449 → 1480
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1453 → 1544
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1187 → 1399
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_017318622.2 → XP_017174111.1 BCL-6 corepressor isoform X2
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_030251500.1 → XP_030107360.1 BCL-6 corepressor isoform X3
- Conserved Domains (5) summary
-
- cd14261
Location:1630 → 1746
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:271 → 688
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1463 → 1494
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1467 → 1558
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1201 → 1413
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_030251499.1 → XP_030107359.1 BCL-6 corepressor isoform X1
- Conserved Domains (5) summary
-
- cd14261
Location:1648 → 1764
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:271 → 688
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1481 → 1512
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1485 → 1576
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1219 → 1431
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_017318624.3 → XP_017174113.1 BCL-6 corepressor isoform X2
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_036162095.1 → XP_036017988.1 BCL-6 corepressor isoform X2
- UniProtKB/Swiss-Prot
- B1AXK3, B1AXK4, B1AXK5, B1AXK6, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3, Q8CGN4
- Conserved Domains (5) summary
-
- cd14261
Location:1634 → 1750
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1467 → 1498
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1471 → 1562
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1205 → 1417
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_036162099.1 → XP_036017992.1 BCL-6 corepressor isoform X6
- Conserved Domains (5) summary
-
- cd14261
Location:1600 → 1716
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1433 → 1464
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1437 → 1528
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1171 → 1383
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_036162098.1 → XP_036017991.1 BCL-6 corepressor isoform X6
- Conserved Domains (5) summary
-
- cd14261
Location:1600 → 1716
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1433 → 1464
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1437 → 1528
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1171 → 1383
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_030251502.2 → XP_030107362.1 BCL-6 corepressor isoform X6
- Conserved Domains (5) summary
-
- cd14261
Location:1600 → 1716
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:257 → 674
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1433 → 1464
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1437 → 1528
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1171 → 1383
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_030251503.2 → XP_030107363.1 BCL-6 corepressor isoform X7
- Conserved Domains (5) summary
-
- cd14261
Location:1596 → 1712
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:271 → 688
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1429 → 1460
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1433 → 1524
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1167 → 1379
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
-
XM_030251501.2 → XP_030107361.1 BCL-6 corepressor isoform X5
- Conserved Domains (5) summary
-
- cd14261
Location:1614 → 1730
- PUFD; PCGF Ub-like fold discriminator of BCOR
- pfam05109
Location:271 → 688
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- sd00045
Location:1447 → 1478
- ANK; ANK repeat [structural motif]
- pfam12796
Location:1451 → 1542
- Ank_2; Ankyrin repeats (3 copies)
- pfam15808
Location:1185 → 1397
- BCOR; BCL-6 co-repressor, non-ankyrin-repeat region