U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Galc galactosylceramidase [ Mus musculus (house mouse) ]

    Gene ID: 14420, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Galcprovided by MGI
    Official Full Name
    galactosylceramidaseprovided by MGI
    Primary source
    MGI:MGI:95636
    See related
    Ensembl:ENSMUSG00000021003 AllianceGenome:MGI:95636
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    twi; Gacy; twitcher; 2310068B06Rik; A930008M05Rik
    Summary
    This gene encodes galactosylceramidase, the lysosomal hydryolase involved in the catabolism of galactosylceramide. Mutations in this gene result in slow growth, tremors and hind leg weakness, collectively termed as the 'twitcher' phenotype. In humans, deficiency of this gene product causes a lysosomal storage disorder known as Krabbe disease. [provided by RefSeq, Dec 2014]
    Expression
    Ubiquitous expression in kidney adult (RPKM 11.0), testis adult (RPKM 4.6) and 25 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Galc in Genome Data Viewer
    Location:
    12 E; 12 49.83 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (98168543..98226565, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (98202287..98259459, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35326 Neighboring gene STARR-seq mESC enhancer starr_32988 Neighboring gene STARR-seq mESC enhancer starr_32989 Neighboring gene STARR-seq mESC enhancer starr_32990 Neighboring gene STARR-seq mESC enhancer starr_32991 Neighboring gene STARR-seq mESC enhancer starr_32992 Neighboring gene STARR-seq mESC enhancer starr_32993 Neighboring gene predicted gene, 47415 Neighboring gene STARR-seq mESC enhancer starr_32994 Neighboring gene heterogeneous nuclear ribonucleoprotein A/B-like Neighboring gene STARR-positive B cell enhancer ABC_E8497 Neighboring gene STARR-positive B cell enhancer ABC_E8498 Neighboring gene STARR-positive B cell enhancer ABC_E5347 Neighboring gene STARR-positive B cell enhancer ABC_E11519 Neighboring gene G-protein coupled receptor 65 Neighboring gene STARR-positive B cell enhancer mm9_chr12:99698044-99698344 Neighboring gene potassium channel, subfamily K, member 10 Neighboring gene predicted gene, 40893

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Deficiency of galactosyl-ceramidase in adult oligodendrocytes worsens disease severity during chronic experimental allergic encephalomyelitis. Saldivia N, et al. Mol Ther, 2024 Sep 4. PMID 38937968,
    2. Distribution and characterization of GFP(+) donor hematogenous cells in Twitcher mice after bone marrow transplantation. Wu YP, et al. Am J Pathol, 2000 Jun. PMID 10854208, Free PMC Article
    3. Generation of a mouse with low galactocerebrosidase activity by gene targeting: a new model of globoid cell leukodystrophy (Krabbe disease). Luzi P, et al. Mol Genet Metab, 2001 Jul. PMID 11461188
    4. Intraventricular administration of recombinant adenovirus to neonatal twitcher mouse leads to clinicopathological improvements. Shen JS, et al. Gene Ther, 2001 Jul. PMID 11526455
    5. Delayed clinical and pathological signs in twitcher (globoid cell leukodystrophy) mice on a C57BL/6 x CAST/Ei background. Biswas S, et al. Neurobiol Dis, 2002 Aug. PMID 12270695

    See all (155) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Deficiency of galactosyl-ceramidase in adult oligodendrocytes worsens disease severity during chronic experimental allergic encephalomyelitis.
      Title: Deficiency of galactosyl-ceramidase in adult oligodendrocytes worsens disease severity during chronic experimental allergic encephalomyelitis.
    2. Perinatal loss of galactosylceramidase in both oligodendrocytes and microglia is crucial for the pathogenesis of Krabbe disease in mice.
      Title: Perinatal loss of galactosylceramidase in both oligodendrocytes and microglia is crucial for the pathogenesis of Krabbe disease in mice.
    3. Neuron-specific ablation of the Krabbe disease gene galactosylceramidase in mice results in neurodegeneration.
      Title: Neuron-specific ablation of the Krabbe disease gene galactosylceramidase in mice results in neurodegeneration.
    4. Visual System Impairment in a Mouse Model of Krabbe Disease: The Twitcher Mouse.
      Title: Visual System Impairment in a Mouse Model of Krabbe Disease: The Twitcher Mouse.
    5. Brainstem development requires galactosylceramidase and is critical for pathogenesis in a model of Krabbe disease.
      Title: Brainstem development requires galactosylceramidase and is critical for pathogenesis in a model of Krabbe disease.
    6. Data show that transgenic galactocerebrosidase (GALC) activity was mainly localized at the Purkinje cells layer in the cerebellum of the AAV-treated twitcher mice.
      Title: Mitigation of cerebellar neuropathy in globoid cell leukodystrophy mice by AAV-mediated gene therapy.
    7. The results of this study indicated that the greater neurochemical pathology observed in the optic nerve than in the sciatic nerve of beta-gal -/- mice is likely due to the greater glycolipid storage in optic nerve.
      Title: Myelin abnormalities in the optic and sciatic nerves in mice with GM1-gangliosidosis.
    8. This study demonistrated that galactosylceramidase Deficiency also casue neuromuscular dysfunction.
      Title: Mechanism of neuromuscular dysfunction in Krabbe disease.
    9. results show that GALCtwi-5J, a spontaneous mutation in murine GALC precisely matches the E130K missense mutation in patients with infantile Krabbe disease
      Title: Missense mutation in mouse GALC mimics human gene defect and offers new insights into Krabbe disease.
    10. Insights into the mechanisms underlying galactosylceramidase regulation of early post-natal neurogenic niches improve our understanding of the multi-component pathology of globoid cell leukodystrophy .
      Title: The galactocerebrosidase enzyme contributes to maintain a functional neurogenic niche during early post-natal CNS development.
    Submit: New GeneRIF Correction See all GeneRIFs (18)

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables galactosylceramidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables galactosylceramidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables galactosylceramidase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables galactosylceramidase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in galactosylceramide catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within galactosylceramide catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within galactosylceramide catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in galactosylceramide catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in galactosylceramide catabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within myelination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in lysosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    galactocerebrosidase
    Names
    GALCERase
    galactocerebroside beta-galactosidase
    galactosylceramide beta-galactosidase
    NP_032105.2
    XP_006515535.1
    XP_017170449.1
    XP_030102421.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008079.4 → NP_032105.2  galactocerebrosidase precursor

      See identical proteins and their annotated locations for NP_032105.2

      Status: REVIEWED

      Source sequence(s)
      AC122317, BC065140, BC086671, D38557
      Consensus CDS
      CCDS36517.1
      UniProtKB/Swiss-Prot
      O35151, P54818, Q3U3H7
      Related
      ENSMUSP00000021390.8, ENSMUST00000021390.9
      Conserved Domains (2) summary
      pfam02057
      Location:17 → 684
      Glyco_hydro_59; Glycosyl hydrolase family 59
      cl23815
      Location:32 → 313
      Glyco_hydro_30; O-Glycosyl hydrolase family 30

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      98168543..98226565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246561.2 → XP_030102421.1  galactocerebrosidase isoform X1

      UniProtKB/TrEMBL
      A0A1Y7VM63, Q3TTJ1
      Conserved Domains (2) summary
      pfam02057
      Location:1 → 233
      Glyco_hydro_59; Glycosyl hydrolase family 59
      pfam17387
      Location:241 → 357
      Glyco_hydro_59M; Glycosyl hydrolase family 59 central domain

    2. XM_017314960.3 → XP_017170449.1  galactocerebrosidase isoform X1

      UniProtKB/TrEMBL
      A0A1Y7VM63, Q3TTJ1
      Related
      ENSMUSP00000152540.2, ENSMUST00000221063.2
      Conserved Domains (2) summary
      pfam02057
      Location:1 → 233
      Glyco_hydro_59; Glycosyl hydrolase family 59
      pfam17387
      Location:241 → 357
      Glyco_hydro_59M; Glycosyl hydrolase family 59 central domain

    3. XM_006515472.5 → XP_006515535.1  galactocerebrosidase isoform X2

      Conserved Domains (2) summary
      pfam02057
      Location:55 → 349
      Glyco_hydro_59; Glycosyl hydrolase family 59
      pfam17387
      Location:357 → 418
      Glyco_hydro_59M; Glycosyl hydrolase family 59 central domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P54818.2 GenPept UniProtKB/Swiss-Prot:P54818

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous