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    AA986860 expressed sequence AA986860 [ Mus musculus (house mouse) ]

    Gene ID: 212439, updated on 2-Nov-2024

    Summary

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    Official Symbol
    AA986860provided by MGI
    Official Full Name
    expressed sequence AA986860provided by MGI
    Primary source
    MGI:MGI:2138143
    See related
    Ensembl:ENSMUSG00000042510 AllianceGenome:MGI:2138143
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sarg; E030025M07
    Summary
    Predicted to be located in cytosol and plasma membrane. Predicted to be active in cytoplasm. Is expressed in gut and metanephros. Orthologous to human C1orf116 (chromosome 1 open reading frame 116). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in large intestine adult (RPKM 22.0), small intestine adult (RPKM 12.6) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See AA986860 in Genome Data Viewer
    Location:
    1 E4; 1 56.89 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (130659707..130672359)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (130731942..130744622)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene complement component 4 binding protein, pseudogene 1 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1230 Neighboring gene YOD1 deubiquitinase Neighboring gene STARR-seq mESC enhancer starr_02204 Neighboring gene predicted gene 28857 Neighboring gene predicted gene 28856 Neighboring gene STARR-seq mESC enhancer starr_02205 Neighboring gene Fc receptor, IgA, IgM, high affinity Neighboring gene predicted gene 15848

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC156398

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    specifically androgen-regulated gene protein
    Names
    specifically androgen-regulated protein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421509.1 → NP_001408438.1  specifically androgen-regulated gene protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC139231

    2. NM_177604.4 → NP_808272.2  specifically androgen-regulated gene protein isoform 1

      See identical proteins and their annotated locations for NP_808272.2

      Status: VALIDATED

      Source sequence(s)
      AC139231
      Consensus CDS
      CCDS48352.1
      UniProtKB/Swiss-Prot
      A2VDH0, Q4FZK7, Q8BHU5, Q8BI29
      Related
      ENSMUSP00000046172.7, ENSMUST00000039323.8
      Conserved Domains (1) summary
      pfam15385
      Location:40 → 606
      SARG; Specifically androgen-regulated gene protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      130659707..130672359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BI29.2 GenPept UniProtKB/Swiss-Prot:Q8BI29

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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