U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Peg3 paternally expressed 3 [ Mus musculus (house mouse) ]

    Gene ID: 18616, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Peg3provided by MGI
    Official Full Name
    paternally expressed 3provided by MGI
    Primary source
    MGI:MGI:104748
    See related
    Ensembl:ENSMUSG00000002265 AllianceGenome:MGI:104748
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pw1; End4; ASF-1; Gcap4; Zfp102; mKIAA0287
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in autophagosome and nucleus. Is expressed in several structures, including alimentary system; brain; branchial arch; genitourinary system; and sensory organ. Orthologous to human PEG3 (paternally expressed 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in placenta adult (RPKM 77.8), limb E14.5 (RPKM 49.2) and 12 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Peg3 in Genome Data Viewer
    Location:
    7 A1; 7 3.89 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6706891..6733443, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6703892..6730462, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger, imprinted 2 Neighboring gene zinc finger, imprinted 1 Neighboring gene STARR-seq mESC enhancer starr_17985 Neighboring gene Peg3 opposite strand Neighboring gene ubiquitin specific peptidase 29 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17987 Neighboring gene STARR-seq mESC enhancer starr_17989 Neighboring gene microRNA 3099

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Transcription-driven DNA methylation setting on the mouse Peg3 locus. Bretz CL, et al. Epigenetics, 2017. PMID 28925797, Free PMC Article
    2. Paternally expressed Peg3 controls maternally expressed Zim1 as a trans factor. Ye A, et al. PLoS One, 2014. PMID 25265264, Free PMC Article
    3. DNA-Binding Motif of the Imprinted Transcription Factor PEG3. Lee S, et al. PLoS One, 2015. PMID 26692216, Free PMC Article
    4. Sex and Tissue Specificity of Peg3 Promoters. Perera BP, et al. PLoS One, 2016. PMID 27711129, Free PMC Article
    5. Embryonic deregulation of muscle stress signaling pathways leads to altered postnatal stem cell behavior and a failure in postnatal muscle growth. Nicolas N, et al. Dev Biol, 2005 May 15. PMID 15893971

    See all (147) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CircBCL2L13 attenuates cardiomyocyte oxidative stress and apoptosis in cardiac ischemia-reperfusion injury via miR-1246/PEG3 signaling.
      Title: CircBCL2L13 attenuates cardiomyocyte oxidative stress and apoptosis in cardiac ischemia‒reperfusion injury via miR-1246/PEG3 signaling.
    2. Epigenetic reactivation of PEG3 by EZH2 inhibitors suppresses renal clear cell carcinoma progress.
      Title: Epigenetic reactivation of PEG3 by EZH2 inhibitors suppresses renal clear cell carcinoma progress.
    3. Paternally expressed gene 3 (Pw1/Peg3) promotes sexual dimorphism in metabolism and behavior.
      Title: Paternally expressed gene 3 (Pw1/Peg3) promotes sexual dimorphism in metabolism and behavior.
    4. Allele-specific enhancer interaction at the Peg3 imprinted domain
      Title: Allele-specific enhancer interaction at the Peg3 imprinted domain.
    5. Study data show that Pw1/Peg3 regulates muscle fiber number determination during fetal development in a gene-dosage manner and regulates satellite cell metabolism in the adult.
      Title: The imprinted gene Pw1/Peg3 regulates skeletal muscle growth, satellite cell metabolic state, and self-renewal.
    6. Maternal deletion of Peg3-DMR (differentially methylated region) caused significant effects on the activity of the paternal allele, 2-fold increase of Peg3 and Usp29 throughout various tissues and different developmental stages. These effects were unidirectional with the maternal allele influencing the paternal one. These results suggest the presence of trans-allelic regulation associated with the Peg3-DMR.
      Title: Trans-allelic mutational effects at the Peg3 imprinted locus.
    7. YY1 is mainly involved in controlling the transcriptional levels, but not the DNA methylation, of the Peg3 domain.
      Title: YY1's role in the Peg3 imprinted domain.
    8. this study suggests that Peg3 may function as a direct transcriptional regulator for Oxtr expression that acts to moderate the milk letdown process.
      Title: Oxytocin receptor is regulated by Peg3.
    9. Data shows that loss of offspring Peg3 reduces neonatal ultrasonic vocalizations and increases maternal anxiety in wild-type mothers
      Title: Loss of offspring Peg3 reduces neonatal ultrasonic vocalizations and increases maternal anxiety in wild-type mothers.
    10. Transcription driven by the alternative promoter U1 is required for oocyte-specific DNA methylation setting on the Peg3 locus.
      Title: Transcription-driven DNA methylation setting on the mouse Peg3 locus.
    Submit: New GeneRIF Correction See all GeneRIFs (53)

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (7)  1 citation

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    paternally-expressed gene 3 protein
    Names
    granule cell antiserum positive 4
    paternally expressed gene 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417064.1 → NP_001403993.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53

    2. NM_001417065.1 → NP_001403994.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53

    3. NM_001417066.1 → NP_001403995.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53

    4. NM_001417068.1 → NP_001403997.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53

    5. NM_001417070.1 → NP_001403999.1  paternally-expressed gene 3 protein isoform a

      Status: VALIDATED

      Source sequence(s)
      AC157657
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53

    6. NM_001417071.1 → NP_001404000.1  paternally-expressed gene 3 protein isoform b

      Status: VALIDATED

      Source sequence(s)
      AC157657

    7. NM_001417072.1 → NP_001404001.1  paternally-expressed gene 3 protein isoform b

      Status: VALIDATED

      Source sequence(s)
      AC157657

    8. NM_008817.3 → NP_032843.2  paternally-expressed gene 3 protein isoform a

      See identical proteins and their annotated locations for NP_032843.2

      Status: VALIDATED

      Source sequence(s)
      AC157657
      Consensus CDS
      CCDS20783.1
      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Related
      ENSMUSP00000050750.5, ENSMUST00000051209.11
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      6706891..6733443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242211.2 → XP_030098071.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_017322030.3 → XP_017177519.1  paternally-expressed gene 3 protein isoform X2

      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:943 → 1151
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:408 → 428
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1218 → 1240
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_036152771.1 → XP_036008664.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_036152776.1 → XP_036008669.1  paternally-expressed gene 3 protein isoform X4

      UniProtKB/TrEMBL
      Q0P5Y8
      Conserved Domains (3) summary
      PHA03169
      Location:718 → 936
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:183 → 203
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1003 → 1025
      zf-C2H2; Zinc finger, C2H2 type

    5. XM_030242212.1 → XP_030098072.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    6. XM_036152774.1 → XP_036008667.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    7. XM_036152773.1 → XP_036008666.1  paternally-expressed gene 3 protein isoform X3

      UniProtKB/Swiss-Prot
      O54978, Q3TQ69, Q3URU2, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53
      UniProtKB/TrEMBL
      A0A5F8MPW9
      Conserved Domains (3) summary
      PHA03169
      Location:862 → 1080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1147 → 1169
      zf-C2H2; Zinc finger, C2H2 type

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001010988.1: Suppressed sequence

      Description
      NM_001010988.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3URU2.1 GenPept UniProtKB/Swiss-Prot:Q3URU2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools