U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slc16a9 solute carrier family 16 (monocarboxylic acid transporters), member 9 [ Mus musculus (house mouse) ]

    Gene ID: 66859, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Slc16a9provided by MGI
    Official Full Name
    solute carrier family 16 (monocarboxylic acid transporters), member 9provided by MGI
    Primary source
    MGI:MGI:1914109
    See related
    Ensembl:ENSMUSG00000037762 AllianceGenome:MGI:1914109
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1200003C15Rik; 4930425B13Rik
    Summary
    Predicted to enable carnitine transmembrane transporter activity; creatine transmembrane transporter activity; and monocarboxylic acid transmembrane transporter activity. Predicted to be involved in carnitine transmembrane transport; creatine transmembrane transport; and urate metabolic process. Predicted to be active in plasma membrane. Is expressed in choroid invagination; choroid plexus; and meninges. Orthologous to human SLC16A9 (solute carrier family 16 member 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in kidney adult (RPKM 22.1), lung adult (RPKM 17.4) and 11 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Slc16a9 in Genome Data Viewer
    Location:
    10 B5.3; 10 36.68 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (70081106..70121781)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70245276..70285951)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51771 Neighboring gene STARR-positive B cell enhancer ABC_E5146 Neighboring gene coiled-coil domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_27073 Neighboring gene myoregulin Neighboring gene uncharacterized LOC118567787 Neighboring gene STARR-seq mESC enhancer starr_27078 Neighboring gene STARR-seq mESC enhancer starr_27079 Neighboring gene predicted gene, 40687 Neighboring gene predicted gene, 33704 Neighboring gene STARR-seq mESC enhancer starr_27081 Neighboring gene putative 60S ribosomal protein L39-like 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cellular expression of the monocarboxylate transporter (MCT) family in the placenta of mice. Nagai A, et al. Placenta, 2010 Feb. PMID 20022372
    2. Single-Cell Transcriptomic Analyses of the Developing Meninges Reveal Meningeal Fibroblast Diversity and Function. DeSisto J, et al. Dev Cell, 2020 Jul 6. PMID 32634398, Free PMC Article
    3. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carnitine transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables carnitine transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables creatine transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables creatine transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables monocarboxylic acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in carboxylic acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in carnitine transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in carnitine transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in creatine transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in creatine transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in urate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in urate metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    monocarboxylate transporter 9
    Names
    MCT 9
    solute carrier family 16 member 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025807.3 → NP_080083.2  monocarboxylate transporter 9

      See identical proteins and their annotated locations for NP_080083.2

      Status: PROVISIONAL

      Source sequence(s)
      AC122923
      Consensus CDS
      CCDS23913.1
      UniProtKB/Swiss-Prot
      Q0P652, Q7TM99
      Related
      ENSMUSP00000047912.7, ENSMUST00000046807.7
      Conserved Domains (1) summary
      cd17428
      Location:12 → 479
      MFS_MCT9; Monocarboxylate transporter 9 of the Major Facilitator Superfamily of transporters

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      70081106..70121781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513960.5 → XP_006514023.1  monocarboxylate transporter 9 isoform X1

      See identical proteins and their annotated locations for XP_006514023.1

      UniProtKB/Swiss-Prot
      Q0P652, Q7TM99
      Conserved Domains (1) summary
      cd17428
      Location:12 → 479
      MFS_MCT9; Monocarboxylate transporter 9 of the Major Facilitator Superfamily of transporters
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TM99.1 GenPept UniProtKB/Swiss-Prot:Q7TM99

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools