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    LOC102577503 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic [ Solanum tuberosum (potato) ]

    Gene ID: 102577503, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC102577503
    Gene description
    ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum tuberosum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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    Genomic context

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    See LOC102577503 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239005.1 (1693759..1700438, complement)

    NW_006239005.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11 Neighboring gene auxin response factor 2-like Neighboring gene non-structural maintenance of chromosomes element 4 homolog A-like Neighboring gene uncharacterized LOC102594860

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006239005.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Potato oxysterol binding protein and cathepsin B are rapidly up-regulated in independent defence pathways that distinguish R gene-mediated and field resistances to Phytophthora infestans. Avrova AO, et al. Mol Plant Pathol, 2004 Jan 1. PMID 20565581
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SolTub_3.0 Primary Assembly

    Genomic

    1. NW_006239005.1 Reference SolTub_3.0 Primary Assembly

      Range
      1693759..1700438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006346574.2 → XP_006346636.1  ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

      UniProtKB/TrEMBL
      M1B5I2, M1BW04
      Conserved Domains (1) summary
      CHL00095
      Location:91 → 906
      clpC; Clp protease ATP binding subunit
    Nucleotide Protein
    Heading Accession and Version

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