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    nufip1.S nuclear FMR1 interacting protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 779333, updated on 4-Nov-2024

    Summary

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    Official Symbol
    nufip1.S
    Official Full Name
    nuclear FMR1 interacting protein 1 S homeolog
    Primary source
    Xenbase:XB-GENE-1015996
    Locus tag
    XELAEV_18015770mg
    See related
    EnsemblRapid:ENSXLAG00005031931 AllianceGenome:Xenbase:XB-GENE-1015996
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    nufip; nufip1
    Summary
    Predicted to act upstream of or within box C/D snoRNP assembly. Predicted to be located in nucleus. Orthologous to human NUFIP1 (nuclear FMR1 interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See nufip1.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (125270344..125282386, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (116223242..116235317, complement)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene TSC22 domain family member 1 S homeolog Neighboring gene uncharacterized LOC108701294 Neighboring gene GPALPP motifs-containing protein 1-like Neighboring gene general transcription factor IIF subunit 2 S homeolog Neighboring gene uncharacterized LOC121400672 Neighboring gene uncharacterized LOC121400671

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC154944

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within box C/D snoRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear FMR1 interacting protein 1 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096952.1 → NP_001090421.1  nuclear FMR1 interacting protein 1 S homeolog

      See identical proteins and their annotated locations for NP_001090421.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123380
      UniProtKB/TrEMBL
      A0A974DIN1, Q0IH05
      Related
      ENSXLAP00005095673.1, ENSXLAT00005097427.1
      Conserved Domains (1) summary
      pfam10453
      Location:143 → 196
      NUFIP1; Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      125270344..125282386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018248503.2 → XP_018103992.1  nuclear FMR1 interacting protein 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0UIP1, A0A974DIN1
      Related
      ENSXLAP00005095828.1, ENSXLAT00005097594.1

    2. XM_018248504.2 → XP_018103993.1  nuclear FMR1 interacting protein 1 S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0ULI5, A0A974DIN1
      Related
      ENSXLAP00005095621.1, ENSXLAT00005097371.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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