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    LOC398339 zinc finger protein [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398339, updated on 4-Nov-2022

    Summary

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    Gene symbol
    LOC398339
    Gene description
    zinc finger protein
    Locus tag
    XELAEV_18001371mg
    See related
    EnsemblRapid:ENSXLAG00005021774 EnsemblRapid:ENSXLAG00005021794
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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    Genomic context

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    See LOC398339 in Genome Data Viewer
    Location:
    chromosome: 9_10L
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (134953997..134982902, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694813.1 (1354442..1359657)

    Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108703756 Neighboring gene zinc finger protein 585A L homeolog Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF6.1-like Neighboring gene histone H1B-like Neighboring gene histone H3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Second-order repeats in Xenopus laevis finger proteins. Nietfeld W, et al. J Mol Biol, 1989 Aug 20. PMID 2509712
    2. Evolutionary conserved modules associated with zinc fingers in Xenopus laevis. Knöchel W, et al. Proc Natl Acad Sci U S A, 1989 Aug. PMID 2503827, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    oocyte zinc finger protein XlCOF29
    Names
    Oocyte zinc finger protein XlCOF29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      134953997..134982902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041576574.1 → XP_041432508.1  oocyte zinc finger protein XlCOF29 isoform X1

      UniProtKB/TrEMBL
      A0A8J0TVE8
      Related
      ENSXLAP00005063879.1, ENSXLAT00005065394.1
      Conserved Domains (3) summary
      COG5048
      Location:432 → 618
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:462 → 482
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:376 → 398
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_018240039.2 → XP_018095528.1  oocyte zinc finger protein XlCOF29 isoform X2

      UniProtKB/TrEMBL
      A0A8J0U2M7

    3. XM_018240038.2 → XP_018095527.1  oocyte zinc finger protein XlCOF29 isoform X1

      UniProtKB/TrEMBL
      A0A8J0TVE8
      Related
      ENSXLAP00005063896.1, ENSXLAT00005065410.1
      Conserved Domains (3) summary
      COG5048
      Location:432 → 618
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:462 → 482
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:376 → 398
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_041576575.1 → XP_041432509.1  oocyte zinc finger protein XlCOF29 isoform X3

      UniProtKB/TrEMBL
      A0A8J1LT77
      Related
      ENSXLAP00005063959.1, ENSXLAT00005065473.1
      Conserved Domains (2) summary
      COG5048
      Location:372 → 508
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376 → 396
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P18748.1 GenPept UniProtKB/Swiss-Prot:P18748

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