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    trnau1ap.S tRNA selenocysteine 1 associated protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380280, updated on 4-Nov-2024

    Summary

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    Official Symbol
    trnau1ap.S
    Official Full Name
    tRNA selenocysteine 1 associated protein 1 S homeolog
    Primary source
    Xenbase:XB-GENE-6079018
    See related
    EnsemblRapid:ENSXLAG00005011162 AllianceGenome:Xenbase:XB-GENE-6079018
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    secp43; trnau1apl1; trnau1apl1.S
    Summary
    Predicted to enable tRNA binding activity. Predicted to act upstream of or within selenocysteine incorporation. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See trnau1ap.S in Genome Data Viewer
    Location:
    chromosome: 7S
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (107163904..107171944)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (88797263..88797729, complement)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor CD22-like Neighboring gene 26S proteasome regulatory subunit 6B-like Neighboring gene uncharacterized LOC108705111 Neighboring gene myelin-associated glycoprotein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC69153

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within selenocysteine incorporation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tRNA selenocysteine 1 associated protein 1 S homeolog
    Names
    tRNA selenocysteine 1 associated protein 1 like 1 S homeolog
    tRNA selenocysteine associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087119.1 → NP_001080588.1  tRNA selenocysteine 1 associated protein 1 S homeolog

      See identical proteins and their annotated locations for NP_001080588.1

      Status: PROVISIONAL

      Source sequence(s)
      BC056124
      UniProtKB/TrEMBL
      Q7T0M5
      Related
      ENSXLAP00005032789.1, ENSXLAT00005033581.1
      Conserved Domains (2) summary
      COG0724
      Location:2 → 132
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12610
      Location:3 → 86
      RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      107163904..107171944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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