U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tmem127 transmembrane protein 127 [ Mus musculus (house mouse) ]

    Gene ID: 69470, updated on 2-Nov-2024

    Summary

    Official Symbol
    Tmem127provided by MGI
    Official Full Name
    transmembrane protein 127provided by MGI
    Primary source
    MGI:MGI:1916720
    See related
    Ensembl:ENSMUSG00000034850 AllianceGenome:MGI:1916720
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310003P10Rik
    Summary
    Predicted to enable small GTPase binding activity. Acts upstream of or within endosome organization and regulation of TOR signaling. Predicted to be located in early endosome and plasma membrane. Predicted to be active in membrane. Is expressed in medulla oblongata basal plate and ventral grey horn. Human ortholog(s) of this gene implicated in pheochromocytoma. Orthologous to human TMEM127 (transmembrane protein 127). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in colon adult (RPKM 24.1), ovary adult (RPKM 23.8) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tmem127 in Genome Data Viewer
    Location:
    2 F1; 2 61.87 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (127089868..127103028)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (127247904..127261108)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3401 Neighboring gene small nuclear ribonucleoprotein 200 (U5) Neighboring gene STARR-positive B cell enhancer ABC_E642 Neighboring gene cytosolic iron-sulfur protein assembly 1 Neighboring gene STARR-positive B cell enhancer mm9_chr2:127095727-127096028 Neighboring gene StAR related lipid transfer domain containing 7 Neighboring gene STARR-seq mESC enhancer starr_05622 Neighboring gene STARR-positive B cell enhancer ABC_E4496 Neighboring gene STARR-positive B cell enhancer ABC_E10138 Neighboring gene predicted gene, 54150

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362704.1NP_001349633.1  transmembrane protein 127 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL845368
      Consensus CDS
      CCDS89551.1
      UniProtKB/TrEMBL
      G3UZT7
      Related
      ENSMUSP00000134629.2, ENSMUST00000174288.2
    2. NM_175145.4NP_780354.1  transmembrane protein 127 isoform 1

      See identical proteins and their annotated locations for NP_780354.1

      Status: VALIDATED

      Source sequence(s)
      AL845368
      Consensus CDS
      CCDS16697.1
      UniProtKB/Swiss-Prot
      A2ARF9, Q3TMK7, Q8BGP5
      Related
      ENSMUSP00000035434.9, ENSMUST00000035871.15

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      127089868..127103028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)