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    rhbdd3 rhomboid domain containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 797317, updated on 28-Oct-2024

    Summary

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    Official Symbol
    rhbdd3provided by ZNC
    Official Full Name
    rhomboid domain containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-39
    See related
    Ensembl:ENSDARG00000079816 AllianceGenome:ZFIN:ZDB-GENE-070705-39
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-149d1.4
    Summary
    Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Orthologous to human RHBDD3 (rhomboid domain containing 3). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rhbdd3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (24882633..24887345)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (24378756..24382797)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2 like 1 Neighboring gene EWS RNA-binding protein 1b Neighboring gene EMI domain containing 1 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 5 Neighboring gene patatin-like phospholipase domain containing 7b Neighboring gene mitochondrial ribosomal protein L41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Rapid identification and isolation of zebrafish cDNA clones. Gong Z, et al. Gene, 1997 Nov 12. PMID 9409775
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    rhomboid domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128359.1 → NP_001121831.1  rhomboid domain-containing protein 3

      Status: PROVISIONAL

      Source sequence(s)
      BX664747
      UniProtKB/TrEMBL
      A0A8M1NHF3, A5PMS4
      Related
      ENSDARP00000098546.3, ENSDART00000111302.4
      Conserved Domains (2) summary
      cd14289
      Location:296 → 339
      UBA_RHBD3; UBA domain found in vertebrate rhomboid domain-containing protein 3 (RHBD3)
      cl21536
      Location:53 → 155
      Rhomboid; Rhomboid family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      24882633..24887345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221321.1 → XP_068077422.1  rhomboid domain-containing protein 3 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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