lysmd2 LysM, putative peptidoglycan-binding, domain containing 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lysmd2provided by ZNC
Official Full Name: LysM, putative peptidoglycan-binding, domain containing 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-040801-250
See related: Ensembl:ENSDARG00000091771 AllianceGenome:ZFIN:ZDB-GENE-040801-250
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:91941
Summary: Is expressed in central nervous system; hypophysis; notochord; and pancreas primordium. Orthologous to human LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (39416504..39430956)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (39435496..39449948)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: lysM and putative peptidoglycan-binding domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003507.1 → NP_001003507.1 lysM and putative peptidoglycan-binding domain-containing protein 2

See identical proteins and their annotated locations for NP_001003507.1

Status: PROVISIONAL

Source sequence(s)

BC077165

UniProtKB/Swiss-Prot

A3KQQ8, Q6DEF4

Related

ENSDARP00000111919.2, ENSDART00000127955.4

Conserved Domains (2) summary

cd00118
Location:65 → 109

LysM; Lysine Motif is a small domain involved in binding peptidoglycan

COG1388
Location:28 → 117

LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]