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    si:dkey-20i10.7 si:dkey-20i10.7 [ Danio rerio (zebrafish) ]

    Gene ID: 799792, updated on 28-Oct-2024

    Summary

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    Official Symbol
    si:dkey-20i10.7provided by ZNC
    Official Full Name
    si:dkey-20i10.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-232
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090313-232
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:dkey-20i10.7 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (12488183..12494575, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (12355708..12362100, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene dual adaptor of phosphotyrosine and 3-phosphoinositides Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 Neighboring gene uncharacterized LOC137487333 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC799792

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327796.1 → NP_001314725.1  uncharacterized protein LOC799792

      Status: VALIDATED

      Source sequence(s)
      CT025771
      UniProtKB/TrEMBL
      A0A8M1P3R4
      Conserved Domains (3) summary
      pfam05485
      Location:4 → 76
      THAP; THAP domain
      pfam13359
      Location:373 → 538
      DDE_Tnp_4; DDE superfamily endonuclease
      pfam13613
      Location:291 → 343
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      12488183..12494575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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