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    znf532 zinc finger protein 532 [ Danio rerio (zebrafish) ]

    Gene ID: 559908, updated on 2-Nov-2024

    Summary

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    Official Symbol
    znf532provided by ZNC
    Official Full Name
    zinc finger protein 532provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060531-40
    See related
    Ensembl:ENSDARG00000052894 AllianceGenome:ZFIN:ZDB-GENE-060531-40
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-233a1.2
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF532 (zinc finger protein 532). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See znf532 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (10781984..10823788)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (10689379..10723937)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene retinal homeobox gene 3 Neighboring gene gastrin-releasing peptide Neighboring gene O-acyltransferase like Neighboring gene alpha-kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 532

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      10781984..10823788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017353020.3 → XP_017208509.1  zinc finger protein 532 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    2. XM_005161075.5 → XP_005161132.1  zinc finger protein 532 isoform X1

      See identical proteins and their annotated locations for XP_005161132.1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Related
      ENSDARP00000120865.1, ENSDART00000146248.3
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    3. XM_068215998.1 → XP_068072099.1  zinc finger protein 532 isoform X1

    4. XM_017353022.3 → XP_017208511.1  zinc finger protein 532 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    5. XM_068215996.1 → XP_068072097.1  zinc finger protein 532 isoform X1

    6. XM_017353018.3 → XP_017208507.1  zinc finger protein 532 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    7. XM_068215997.1 → XP_068072098.1  zinc finger protein 532 isoform X1

    8. XM_068215995.1 → XP_068072096.1  zinc finger protein 532 isoform X1

    9. XM_017353021.3 → XP_017208510.1  zinc finger protein 532 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    10. XM_005161073.5 → XP_005161130.1  zinc finger protein 532 isoform X1

      See identical proteins and their annotated locations for XP_005161130.1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    11. XM_005161076.5 → XP_005161133.1  zinc finger protein 532 isoform X1

      See identical proteins and their annotated locations for XP_005161133.1

      UniProtKB/TrEMBL
      A0A8M2B806, F6NP92
      Related
      ENSDARP00000078470.4, ENSDART00000084035.5
      Conserved Domains (3) summary
      sd00017
      Location:1014 → 1034
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:809 → 848
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1200 → 1228
      zf-C2H2_11; zinc-finger C2H2-type

    12. XM_009295225.4 → XP_009293500.1  zinc finger protein 532 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AM08
      Conserved Domains (3) summary
      sd00017
      Location:941 → 961
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:736 → 775
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
      pfam16622
      Location:1127 → 1155
      zf-C2H2_11; zinc-finger C2H2-type
    Nucleotide Protein Strain
    Heading Accession and Version

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