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    LINC01546 long intergenic non-protein coding RNA 1546 [ Homo sapiens (human) ]

    Gene ID: 100129464, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01546provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1546provided by HGNC
    Primary source
    HGNC:HGNC:27336
    See related
    AllianceGenome:HGNC:27336
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    VAL; CXorf28
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01546 in Genome Data Viewer
    Location:
    Xp22.33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (3271820..3284653)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (2885432..2898262)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (3189861..3202694)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 578, pseudogene Neighboring gene arylsulfatase F Neighboring gene ribosomal protein S24 pseudogene 21 Neighboring gene MPRA-validated peak7351 silencer Neighboring gene NANOG hESC enhancer GRCh37_chrX:3102859-3103394 Neighboring gene matrix remodeling associated 5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:3280933-3281483 Neighboring gene argininosuccinate synthetase 1 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • vimentin associated lncRNA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029783.1 RefSeqGene

      Range
      5001..17834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_038428.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX101503

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      3271820..3284653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      2885432..2898262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)