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    Prr22 proline rich 22 [ Mus musculus (house mouse) ]

    Gene ID: 100504446, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Prr22provided by MGI
    Official Full Name
    proline rich 22provided by MGI
    Primary source
    MGI:MGI:2685392
    See related
    Ensembl:ENSMUSG00000090273 AllianceGenome:MGI:2685392
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm546
    Summary
    Orthologous to human PRR22 (proline rich 22). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 74.3) and duodenum adult (RPKM 4.0) See more
    Orthologs
    human all
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    Genomic context

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    See Prr22 in Genome Data Viewer
    Location:
    17 D; 17 29.5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57077276..57079134)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (56770276..56772134)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:56897018-56897127 Neighboring gene STARR-positive B cell enhancer ABC_E5624 Neighboring gene neurturin Neighboring gene dihydrouridine synthase 3 like Neighboring gene regulatory factor X, 2 (influences HLA class II expression) Neighboring gene predicted gene, 41604 Neighboring gene STARR-positive B cell enhancer ABC_E5625 Neighboring gene STARR-seq mESC enhancer starr_42905 Neighboring gene acyl-CoA synthetase bubblegum family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich protein 22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195673.1 → NP_001182602.1  proline-rich protein 22

      Status: PROVISIONAL

      Source sequence(s)
      CT010491
      Consensus CDS
      CCDS57104.1
      UniProtKB/TrEMBL
      F6TNE3
      Related
      ENSMUSP00000127457.3, ENSMUST00000168666.3
      Conserved Domains (1) summary
      pfam15776
      Location:58 → 422
      PRR22; Proline-rich protein family 22

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      57077276..57079134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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