taf15.L TATA-box binding protein associated factor 15 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: taf15.L
Official Full Name: TATA-box binding protein associated factor 15 L homeolog
Primary source: Xenbase:XB-GENE-984016
Locus tag: XELAEV_18012683mg
See related: EnsemblRapid:ENSXLAG00005002321
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: taf15
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 2L

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2L	NC_054373.1 (97599532..97624432, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2L	NC_030726.1 (91861677..91886634, complement)

Chromosome 2L - NC_054373.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: TATA-box binding protein associated factor 15 L homeolog

Names: TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094207.1 → NP_001087676.1 TATA-box binding protein associated factor 15 L homeolog

See identical proteins and their annotated locations for NP_001087676.1

Status: PROVISIONAL

Source sequence(s)

BC081071

UniProtKB/TrEMBL

A0A974HYM3, Q66J39

Related

ENSXLAP00005006972.1, ENSXLAT00005007081.1

Conserved Domains (4) summary

smart00547
Location:395 → 421

ZnF_RBZ; Zinc finger domain

COG0724
Location:266 → 350

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

sd00025
Location:397 → 418

zf-RanBP2; RanBP2-type Zn finger [structural motif]

cl17169
Location:266 → 348

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

97599532..97624432 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)