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    larp1b.L La ribonucleoprotein domain family member 1B L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100049139, updated on 4-Nov-2024

    Summary

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    Official Symbol
    larp1b.L
    Official Full Name
    La ribonucleoprotein domain family member 1B L homeolog
    Primary source
    Xenbase:XB-GENE-17342071
    Locus tag
    XELAEV_18005591mg
    See related
    EnsemblRapid:ENSXLAG00005003706 AllianceGenome:Xenbase:XB-GENE-17342071
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    larp2
    Summary
    Predicted to enable RNA cap binding activity. Predicted to act upstream of or within mRNA stabilization and positive regulation of translation. Predicted to be located in cytoplasmic stress granule and cytosol. Orthologous to human LARP1B (La ribonucleoprotein 1B). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See larp1b.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (68203344..68228399, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (57357432..57382458, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene jade family PHD finger 1 L homeolog Neighboring gene progesterone receptor membrane component 2 L homeolog Neighboring gene abhydrolase domain containing 18 L homeolog Neighboring gene major facilitator superfamily domain containing 8 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100049139

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097967.1 → NP_001091436.1  uncharacterized protein LOC100049139

      See identical proteins and their annotated locations for NP_001091436.1

      Status: PREDICTED

      Source sequence(s)
      BC134815
      UniProtKB/TrEMBL
      A0A974I3H8, A4IFX0
      Related
      ENSXLAP00005011050.1, ENSXLAT00005011224.1
      Conserved Domains (3) summary
      smart00684
      Location:797 → 835
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      COG5193
      Location:24 → 440
      LHP1; La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
      cl02755
      Location:286 → 358
      LAM; LA motif RNA-binding domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      68203344..68228399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018239412.2 → XP_018094901.1  uncharacterized protein LOC100049139 isoform X1

      UniProtKB/TrEMBL
      A0A8J0U1J6, A0A974DYC7
      Related
      ENSXLAP00005011047.1, ENSXLAT00005011221.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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