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    TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 28566, updated on 17-Jun-2024

    Summary

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    Official Symbol
    TRBV21-1provided by HGNC
    Official Full Name
    T cell receptor beta variable 21-1 (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:12198
    See related
    Ensembl:ENSG00000251578 IMGT/GENE-DB:TRBV21-1; AllianceGenome:HGNC:12198
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TRBV211; TCRBV21S1; TCRBV10S1P
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See TRBV21-1 in Genome Data Viewer
    Location:
    7q34
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (142636924..142637384)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (143993712..143994172)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (142344427..142344887)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene T cell receptor beta locus Neighboring gene Sharpr-MPRA regulatory region 1556/5446 Neighboring gene T cell receptor beta variable 20-1 Neighboring gene T cell receptor beta variable 19 Neighboring gene T cell receptor beta variable 22-1 (pseudogene) Neighboring gene T cell receptor beta variable 23-1 (non-functional)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. Willenbrock K, et al. Am J Pathol, 2001 May. PMID 11337383, Free PMC Article
    2. Comprehensive analysis of the functional TCR repertoire at the single-cell level. Ozawa T, et al. Biochem Biophys Res Commun, 2008 Mar 21. PMID 18191637
    3. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. Rowen L, et al. Science, 1996 Jun 21. PMID 8650574
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    Other Names

    • T-cell receptor TRB locus TRBV21-1*01
    • T-cell receptor TRB locus TRBV21-1*01_S6302
    • T-cell receptor TRB locus TRBV21-1*01_S7521
    • T-cell receptor TRB locus TRBV21-1*02

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_001333.2 

      Range
      471659..472126
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      142636924..142637384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187562.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      640572..641032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      143993712..143994172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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