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    Krtap16-1 keratin associated protein 16-1 [ Mus musculus (house mouse) ]

    Gene ID: 100504183, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Krtap16-1provided by MGI
    Official Full Name
    keratin associated protein 16-1provided by MGI
    Primary source
    MGI:MGI:3650326
    See related
    Ensembl:ENSMUSG00000078253 AllianceGenome:MGI:3650326
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11570
    Summary
    Predicted to be located in cytosol and keratin filament. Orthologous to human KRTAP16-1 (keratin associated protein 16-1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human all
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    Genomic context

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    See Krtap16-1 in Genome Data Viewer
    Location:
    11 D; 11 63.33 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (99875529..99877419, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (99984703..99986593, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene keratin associated protein 9-5 Neighboring gene keratin associated protein 29-1 Neighboring gene keratin associated protein 17-1 Neighboring gene STARR-seq mESC enhancer starr_30710 Neighboring gene keratin 33A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    keratin-associated protein 16-1
    Names
    putative keratin-associated protein 10-like ENSP00000375147 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256057.1 → NP_001242986.1  keratin-associated protein 16-1

      See identical proteins and their annotated locations for NP_001242986.1

      Status: VALIDATED

      Source sequence(s)
      AL592545
      Consensus CDS
      CCDS56804.1
      UniProtKB/Swiss-Prot
      A2A5X5
      Related
      ENSMUSP00000100671.3, ENSMUST00000105050.4
      Conserved Domains (3) summary
      pfam01500
      Location:83 → 247
      Keratin_B2; Keratin, high sulfur B2 protein
      pfam05287
      Location:298 → 416
      PMG; PMG protein
      pfam13885
      Location:68 → 112
      Keratin_B2_2; Keratin, high sulfur B2 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      99875529..99877419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2A5X5.1 GenPept UniProtKB/Swiss-Prot:A2A5X5

    Gene LinkOut

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