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    D430041D05Rik RIKEN cDNA D430041D05 gene [ Mus musculus (house mouse) ]

    Gene ID: 241589, updated on 6-Jun-2024

    Summary

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    Official Symbol
    D430041D05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D430041D05 geneprovided by MGI
    Primary source
    MGI:MGI:2181743
    See related
    Ensembl:ENSMUSG00000068373 AllianceGenome:MGI:2181743
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G2; 9630056G07Rik
    Summary
    Is expressed in nervous system; neural retina; thymus; and upper jaw molar. Orthologous to human KIAA1549L (KIAA1549 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cortex adult (RPKM 8.6), cerebellum adult (RPKM 6.9) and 7 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See D430041D05Rik in Genome Data Viewer
    Location:
    2 E2; 2 54.59 cM
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (103973418..104242595, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104143073..104411870, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A930018P22 gene Neighboring gene CD59a antigen Neighboring gene STARR-seq mESC enhancer starr_05283 Neighboring gene STARR-seq mESC enhancer starr_05284 Neighboring gene predicted gene, 22501 Neighboring gene STARR-seq mESC enhancer starr_05287 Neighboring gene predicted gene 13883 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_05288 Neighboring gene STARR-seq mESC enhancer starr_05290 Neighboring gene predicted gene, 35606 Neighboring gene microRNA 1902 Neighboring gene homeodomain interacting protein kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of differentially expressed genes by restriction endonuclease-based gene expression fingerprinting. Ivanova NB, et al. Nucleic Acids Res, 1995 Aug 11. PMID 7659517, Free PMC Article
    2. Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance. Kleinjan DA, et al. Mamm Genome, 2002 Feb. PMID 11889558
    3. A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1. Gawin B, et al. Genome Res, 1999 Nov. PMID 10568747, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0606 protein KIAA1549L homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033347.2 → NP_001028519.2  UPF0606 protein KIAA1549L homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AI606651, AI845358, AK052518, AL844591, BB646253, BC096034, BF464989, BX517992, CN457086, CX239849
      Consensus CDS
      CCDS38190.1
      UniProtKB/TrEMBL
      D3YZ21
      Related
      ENSMUSP00000106756.2, ENSMUST00000089726.10
      Conserved Domains (1) summary
      pfam12877
      Location:498 → 1134
      DUF3827; Domain of unknown function (DUF3827)

    2. NM_001368844.1 → NP_001355773.1  UPF0606 protein KIAA1549L homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL844591, AL954370, BX813317
      Consensus CDS
      CCDS89531.1
      UniProtKB/TrEMBL
      A0A2R8VHF1
      Related
      ENSMUSP00000155023.2, ENSMUST00000136156.9
      Conserved Domains (1) summary
      pfam12877
      Location:498 → 1135
      DUF3827; Domain of unknown function (DUF3827)

    3. NM_001419546.1 → NP_001406475.1  UPF0606 protein KIAA1549L homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL844591, AL954370, BX813317
      UniProtKB/TrEMBL
      A0A2R8VKG2
      Related
      ENSMUSP00000155485.2, ENSMUST00000230671.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      103973418..104242595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239527.3 → XP_011237829.1  UPF0606 protein KIAA1549L homolog isoform X2

      UniProtKB/TrEMBL
      A0A2R8VKG2
      Conserved Domains (2) summary
      PHA03247
      Location:107 → 667
      PHA03247; large tegument protein UL36; Provisional
      pfam12877
      Location:1230 → 1866
      DUF3827; Domain of unknown function (DUF3827)

    2. XM_011239526.3 → XP_011237828.1  UPF0606 protein KIAA1549L homolog isoform X1

      UniProtKB/TrEMBL
      A0A2R8VKG2
      Conserved Domains (2) summary
      PHA03247
      Location:107 → 667
      PHA03247; large tegument protein UL36; Provisional
      pfam12877
      Location:1230 → 1867
      DUF3827; Domain of unknown function (DUF3827)

    3. XM_006499487.5 → XP_006499550.1  UPF0606 protein KIAA1549L homolog isoform X5

      UniProtKB/TrEMBL
      F6ZGR6
      Related
      ENSMUSP00000117041.3, ENSMUST00000141159.9
      Conserved Domains (1) summary
      pfam12877
      Location:383 → 1020
      DUF3827; Domain of unknown function (DUF3827)

    4. XM_011239528.4 → XP_011237830.1  UPF0606 protein KIAA1549L homolog isoform X4

      UniProtKB/TrEMBL
      A0A2R8VKG2
      Conserved Domains (2) summary
      PHA03247
      Location:107 → 667
      PHA03247; large tegument protein UL36; Provisional
      pfam12877
      Location:1230 → 1806
      DUF3827; Domain of unknown function (DUF3827)

    RNA

    1. XR_866274.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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